Linköpings universitet > Department of Computer and Information Science > Division for Database and Information Techniques > Patrick Lambrix
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Annotated bibliography

Preprints

    • Lambrix P, Completing and Debugging Ontologies: state of the art and challenges, arXiv:1908.03171

Book - monograph (1):

Book - edited (1):

Proceedings (14):

Special issues

PhD thesis:

    • Lambrix P, Part-Whole Reasoning in Description Logics, Ph.D. Thesis 448, Department of Computer and Information Science, Linköpings universitet, 1996.

Book Chapters (8):

Journal Publications (22):

Video Journal Publications (1):

Magazine Publications (1):

  • Semantic Web, Databases and Ontologies for the Life Sciences
    • Lambrix P, Strömbäck L, Where is my protein? - Issues in Information Integration, BIOforum Europe,11(7-8):24-26, 2007. Invited contribution. Also republished in the 2007 Highlights Issue, 12(1-2):24-25, 2008.

Conference and Workshop Publications (100+):

Abstracts:

  • Semantic Web, Databases and Ontologies for the Life Sciences
    • Lambrix P, Valentina I, Debugging is-a structure in and mappings between taxonomies, Poster at Scandinavian Conference on Health Informatics, 67, Linköping, Sweden, 2012.
    • Lambrix P, Kaliyaperumal R, Session-based Ontology Alignment, Poster at Scandinavian Conference on Health Informatics, 65, Linköping, Sweden, 2012.
    • Tan H, Lambrix P, Selecting an ontology for biomedical text mining, Poster at the 17th Conference on Intelligent Systems for Molecular Biology, ISMB-2009, Stockholm, Sweden, 2009.
    • Lambrix P, Tan H, Aligning biomedical ontologies, Poster at the 4th Integrative Bioinformatics Workshop, Gent, Belgium, 2007.
    • Jakoniene V, Lambrix P, A tool for evaluating strategies for grouping of biological data, Seventh Swedish Bioinformatics Workshop for PhD students and PostDocs, 23-24, Stockholm, Sweden, 2006.
    • Tan H, Lambrix P, Aligning and merging biomedical ontologies, Seventh Swedish Bioinformatics Workshop for PhD students and PostDocs, 18, Stockholm, Sweden, 2006.
    • Backofen R, Badea M, Barahona P, Badea L, Bry F, Dawelbait G, Doms A, Fages F, Goble C, Henschel A, Hotaran A, Huang B, Krippahl L, Lambrix P, Nutt W, Schroeder M, Soliman S, Will S, Towards a Semantic Web for Bioinformatics, Poster at Bioinformatics 2004, p 26, Linköping, Sweden, 2004.
    • Jakoniene V, Lambrix P, Implementation of a System for Integrated Access to Biological Data Sources, Poster at Bioinformatics 2004, p 44, Linköping, Sweden, 2004.
    • Lambrix P, Tan H, A Semi-Automatic Tool for Merging Bio-Ontologies, Poster at Bioinformatics 2004, p 55, Linköping, Sweden, 2004.
    • Lambrix P, Tan H, A semi-automatic tool for merging bio-ontologies, Fourth Swedish Bioinformatics Workshop for PhD students and PostDocs, 18-19, Linköping, Sweden, 2003.
    • Jakoniene V, Lambrix P, Monitoring performance and access to biological databases, Third Swedish Annual Workshop in Bioinformatics for PhD students and PostDocs, p 17, Stockholm, Sweden, 2002.
    • Lambrix P, Jakoniene V, A databank knowledge base for the integration of biological databanks, Bioinformatics 2002, p 62, Bergen, Norway, 2002.
    • Lambrix P, Querying Multiple Biological Databanks, poster at the 9th International Conference on Intelligent Systems for Molecular Biology - ISMB01, p 64, Copenhagen, Denmark, 2001.
    • Lambrix P, A Query Language and Architecture for Querying Multiple Biological Databanks, Proceedings of Bioinformatics 2001, p 24, Skövde, Sweden, 2001.
    • Lambrix P, Jakoniene V, Lessons learned from the analysis of characteristics of biological databanks, Second Annual National Workshop for PhD students and PostDocs in Bioinformatics in Sweden, p 9, Göteborg, Sweden, 2001.

Project Deliverables:

  • REWERSE
    • Backofen R, Burger A, Busch A, Dawelbait G, Fages F, Jakoniene V, Lambrix P, McLeod K, Soliman S, Tan H, Will S, Implementation of prototypes, REWERSE Deliverable A2-D6, 2007.
    • Dawelbait G, Doms A, Lambrix P, Royer L, Schroeder M, Bioinformatics Demonstrators, REWERSE Deliverable A2-D4, 2006.
    • Backofen R, Badea M, Barahona P, Berndtsson M, Burger A, Dawelbait G, Doms A, Fages F, Hotaran A, Jakoniene V, Krippahl L, Lambrix P, McLeod K, Nutt W, Olsson B, Schroeder M, Schroiff A, Soliman S, Tan H, Tilivea D, Will S, Requirements and specification of use cases, REWERSE Deliverable A2-D3, 2005.
    • Backofen R, Badea M, Barahona P, Burger A, Dawelbait G, Doms A, Fages F, Hotaran A, Jakoniene V, Krippahl L, Lambrix P, McLeod K, Möller S, Nutt W, Olsson B, Schroeder M, Soliman S, Tan H, Tilivea D, Will S, Usage of bioinformatics tools and identification of information sources, REWERSE Deliverable A2-D2, 2005.
    • Backofen R, Badea M, Burger A, Fages F, Lambrix P, Nutt W, Schroeder M, Soliman S, Will S, State-of-the-art in Bioinformatics, REWERSE Deliverable A2-D1, 2004.

Selected Student Publications:

  • Ph.D. theses (supervisor)
    • Ivanova V, Fostering User Involvement in Ontology Alignment and Alignment Evaluation, Ph.D. Thesis 1891, Department of Computer and Information Science, Linköping University, 2017 (defended 2018).
    • Dragisic Z, Completion of Ontologies and Ontology Networks, Ph.D. Thesis 1852, Department of Computer and Information Science, Linköping University, 2017.
    • Tan H, Aligning Biomedical Ontologies, Ph.D. Thesis 1110, Department of Computer and Information Science, Linköping University, 2007.
    • Jakoniene V, Integration of Biological Data, Ph.D. Thesis 1035, Department of Computer and Information Science, Linköping University, 2006.
  • Lic. theses (supervisor)
    • Dragisic Z, Completing the Is-a Structure in Description Logics Ontologies, Lic. Thesis 1683, Department of Computer and Information Science, Linköping University, 2014.
    • Ivanova V, Integration of Ontology Alignment and Ontology Debugging for Taxonomy Networks, Lic. Thesis 1644, Department of Computer and Information Science, Linköping University, 2014.
    • Liu Q, Dealing with Missing Mappings and Structure in a Network of Ontologies, Lic. Thesis 1468, Department of Computer and Information Science, Linköping University, 2011.
    • Tan H, Aligning and Merging Biomedical Ontologies, Lic. Thesis 1225, Department of Computer and Information Science, Linköping University, 2006.
    • Jakoniene V, A Study in Integrating Multiple Biological Data Sources, Lic. Thesis 1149, Department of Computer and Information Science, Linköping University, 2005.
  • Ph.D. theses (co-supervisor)
    • Leifler O, Affordances and constraints of intelligent decision support for military command and control - three case studies of support systems Department of Computer and Information Science, Linköping University, 2011.
    • Åberg C, An Evaluation Platform for Semantic Web Technology, Ph.D. Thesis 1061, Department of Computer and Information Science, Linköping University, 2007.
    • Takkinen J, From Information Management to Task Management in Electronic Mail, Ph.D. Thesis 732, Department of Computer and Information Science, Linköping University, 2002.
    • Andre-Jönsson H, Indexing strategies for time series data, Ph.D. Thesis 757, Department of Computer and Information Science, Linköping University, 2002.
  • Lic. theses (co-supervisor)
    • Åberg C, Integration of Organizational Workflows and the Semantic Web. Lic. thesis 1168, Department of Computer Science and Information Science, Linköping University, 2005.
    • Takkinen J, CAFE: Towards a Conceptual Model for Information Management in Electronic Mail, Lic. thesis 640, Department of Computer Science and Information Science, Linköping University, 1997.
    • Wahllöf N, A Default Extension to Description Logics and its Applications, Lic. thesis 591, Department of Computer Science and Information Science, Linköping University, 1996.
  • M.Sc. theses
    • Rundqvist D, Grouping biological data, Undergraduate thesis, Department of Computer and Information Science, Linköping University, 2006. LITH-IDA-EX--06/029--SE. Best Undergraduate Thesis Award 2006 at the Department of Computer and Information Science, Linköping University.
    • Edberg A, Förening av ontologier inom bioinformatik. Undergraduate thesis, Department of Computer and Information Science, Linköping University, 2002. LiTH-IDA-Ex-02/62. Best Undergraduate Thesis Award 2002 at the Department of Computer and Information Science, Linköping University.
    • Jacobsen S, A Hybrid System for Knowledge-Based Information Retrieval, Undergraduate thesis, Department of Computer and Information Science, Linköping University, 1997. LiTH-IDA-Ex-97/59. Best Undergraduate Thesis Award 1997 at the Department of Computer and Information Science, Linköping University.

Presentations and Panels:

(Most presentations are in connection to conference papers. They are not listed here.)

Scholar google (up to date)

DBLP entry (most papers)

Scopus entry (some papers)

PubMed entry (few papers)

Diva (up to date for published items)

ORCID (up to date for published items)

ResearchGate (up to date)

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