Publications about Semantic Web research at LiU
2024
- Abd Nikooie Pour M, Tarafder P, Wiberg A, Li H, Moverare J, Lambrix P, PBF-AMP-Onto: An Ontology for Powder Bed Fusion Additive Manufacturing Processes, First International Workshop on Semantic Materials Science: Harnessing the Power of Semantic Web Technologies in Materials Science, CEUR Workshop Proceedings 3760, 2-14, Amsterdam, The Netherlands, 2024. slides
- Andersson OB, Li H, Lambrix P, Armiento R, An ontology for units of measures across history, standards, and scientific and technology domains, First International Workshop on Semantic Materials Science: Harnessing the Power of Semantic Web Technologies in Materials Science, CEUR Workshop Proceedings 3760, 15-28, Amsterdam, The Netherlands, 2024.
- Blomqvist E, Garcia-Castro R, Hernandez D, Hitzler P, Lindecrantz M, Poveda-Villalon, M, 2nd International Workshop on Knowledge Graphs for Sustainability (KG4S 2024), (Amsterdam, The Netherlands), CEUR Workshop Proceedings Volume 3753, 2024.
- Fu B, Lambrix P, Li, H, Nunes S, Pesquita C, (eds), Proceedings of the 9th International Workshop on Visualization and Interaction for Ontologies, Linked Data and Knowledge Graphs, (Baltimore, MD, USA), CEUR Workshop Proceedings Volume 3773, 2024. [VOILA 2024].
- Fu B, Lambrix P, Pesquita C, Editorial: Special Issue on Interactive Semantic Web, Semantic Web Journal, Accepted 2024.
- Lambrix P, Armiento R, Li H, Hartig O, Abd Nikooie Pour M, Li Y, The Materials Design Ontology, Semantic Web Journal 15(2):481-515, 2024.
- Li H, Blomqvist E, Lambrix P, Initial and Experimental Ontology Alignment Results in the Circular Economy Domain, 2nd International Workshop on Knowledge Graphs for Sustainability - KG4S 2024, CEUR Workshop Proceedings 3753, 79-85, Hersonissos, Greece, 2024.
- Li H, Wang C, Lambrix P, Initial Development of an Ontology for the Semiconductor Domain -- SemicONTO, First International Workshop on Semantic Materials Science: Harnessing the Power of Semantic Web Technologies in Materials Science, CEUR Workshop Proceedings 3760, 120-127, Amsterdam, The Netherlands, 2024.
- Valdestilhas A, Li H, Lambrix P, Sack H, First International Workshop on Semantic Materials Science: Harnessing the Power of Semantic Web Technologies in Materials Science, (Amsterdam, The Netherlands), CEUR Workshop Proceedings Volume 3760, 2024.
2023
- Abd Nikooie Pour M, Algergawy A, Buche P, Castro LJ, Chen J, Coulet A, Cufi J, Dong H, Fallatah O, Faria D, Fundulaki I, Hertling S, He Y, Horrocks I, Huschka M, Ibanescu L, Jain S, Jimenez-Ruiz E, Karam N, Lambrix P, Li H, Li Y, Monnin P, Nasr E, Paulheim H, Pesquita C, Saveta T, Shvaiko P, Sousa G, Trojahn C, Vatascinova J, Wu M, Yaman B, Zamazal O, Zhou L, Results of the Ontology Alignment Evaluation Initiative 2023, 18th International Workshop on Ontology Matching - OM 2023, CEUR Workshop Proceedings 3591, 97-139, Athens, Greece, 2023.
- Abd Nikooie Pour M, Li H, Armiento R, Lambrix P, Phrase2Onto: A Tool to Support Ontology Extension, 27th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems - KES 2023, Procedia Computer Science 225:1415-1424, Athens, Greece, 2023.
- Blomqvist E, Li H, Keskisärkkä R, Lindecrantz M, Abd Nikooie Pour M, Li Y, Lambrix P, Cross-domain Modelling - A Network of Core Ontologies for the Circular Economy, 14th Workshop on Ontology Design and Patterns - WOP 2023, CEUR Workshop Proceedings 3636, 1-12, Athens, Greece, 2023.
- Fu B, Lambrix P, Li, H, Nunes S, Pesquita C, (eds), Proceedings of the 8th International Workshop on Visualization and Interaction for Ontologies, Linked Data and Knowledge Graphs, (Athens, Greece), CEUR Workshop Proceedings Volume 3508, 2023. [VOILA 2023].
- Ghiringhelli L, Baldauf C, Bereau T, Brockhauser S, Carbogno C, Chamanara J, Cozzini S, Curtarolo S, Draxl C, Dwaraknath S, Fekete A, Kermode J, Koch C, Kühbach M, Ladines A N, Lambrix P, Himmer M-O, Levchenko S, Oliveira M, Michalchuk A, Miller R, Onat B, Pavone P, Pizzi G, Regler B, Rignanese G-M, Schaarschmidt J, Scheidgen M, Schneidewind A, Sheveleva T, Su C, Usvyat D, Valsson O, Wöll C, Scheffler M, Shared Metadata for Data-Centric Materials Science, Scientific Data, 10:Article 626, 2023.
- Khayatbashi S, Hartig O, Jalali A, Transforming Event Knowledge Graph to Object-Centric Event Logs: A Comparative Study for Multi-dimensional Process Analysis, Conceptual Modeling. ER 2023. 220-238., 2023.
- Lambrix P, Completing and Debugging Ontologies: State of the Art and Challenges in Repairing Ontologies. ACM Journal of Data and Information Quality, 15:Article 41, 2023.
- Li H, Hartig O, Armiento R, Lambrix P, Ontology-Based GraphQL Server Generation for Data Access and Data Integration, Semantic Web Journal. Accepted 2023.
- Ora Lassila, Michael Schmidt, Olaf Hartig, Brad Bebee, Dave Bechberger, Willem Broekema, Ankesh Khandelwal, Kelvin Lawrence, Carlos Manuel Lopez Enriquez, Ronak Sharda and Bryan Thompson, The OneGraph vision : Challenges of breaking the graph model lock-in, Semantic Web, 2023, 14, 125-134
- Li H, Abd Nikooie Pour M, Li Y, Lindecrantz M, Blomqvist E, Lambrix P, A Survey of General Ontologies for the Cross-Industry Domain of Circular Economy, 1st International Workshop on Knowledge Graphs for Sustainability - KG4S 2023, WWW '23 Companion: Companion Proceedings of the ACM Web Conference 2023, 731-741, Austin, TX, USA, 2023.
- Li H, Hartig O, Armiento R, Lambrix P, OBG-gen: Ontology-Based GraphQL Server Generation for Data Integration, ISWC 2023 Posters, Demos and Industry Tracks: From Novel Ideas to Industrial Practice co-located with 22nd International Semantic Web Conference (ISWC 2023), CEUR Workshop Proceedings 3632, Athens, Greece, 2023.
- Li H, Hartig O, Armiento R, Lambrix P, Ontology-Based GraphQL Server Generation for Data Access and Data Integration, Semantic Web Journal. Accepted 2023. paper
- Li Y, Lambrix P, Repairing EL Ontologies Using Weakening and Completing, The Semantic Web - 20th International Conference, ESWC 2023, LNCS 13870, 298-315, Hersonissos, Crete, Greece, 2023. paper (doi, long version), systems, experimental results.
- Li Y, Lambrix P, A System for Repairing EL Ontologies Using Weakening and Completing, The Semantic Web: ESWC 2023 Satellite Events, LNCS 13998, 101-105, Hersonissos, Crete, Greece.
- Li Y, Lambrix P, Repairing Ontologies using Debugging, Weakening and Completing (Extended abstract), 36th International Workshop on Description Logics, CEUR Workshop Proceedings 3515, Rhodes, Greece, 2023.
- Li Y, Lambrix P, Repairing Networks of Ontologies using Weakening and Completing, 18th International Workshop on Ontology Matching - OM 2023, CEUR Workshop Proceedings 3591, 79-84, Athens, Greece, 2023.
- Nicolas Matentzoglu, Ian Braun, Anita R. Caron, Damien Goutte-Gattat, Benjamin M. Gyori, Nomi L. Harris, Emily Hartley, Harshad B. Hegde, Sven Hertling, Charles Tapley Hoyt, Hyeongsik Kim, Huanyu Li, James McLaughlin, Cassia Trojhan, Nicole Vasilevsky and Christopher J. Mungall, A Simple Standard for Ontological Mappings 2023: Updates on data model, collaborations and tooling, 18th International Workshop on Ontology Matching - OM 2023, Athens, Greece, 2023.
2022
- Abd Nikooie Pour M, Algergawy A, Buche P, Castro L, Chen J, Dong H, Fallatah O, Faria D, Fundulaki I, Hertling S, He Y, Horrocks I, Huschka M, Ibanescu L, Jimenez-Ruiz E, Karam N, Laadhar A, Lambrix P, Li H, Li Y, Michel F, Nasr E, Paulheim H, Pesquita C, Saveta T, Shvaiko P, Trojahn C, Verhey C, Wu M, Yaman B, Zamazal O, Zhou L, Results of the Ontology Alignment Evaluation Initiative 2022, 17th International Workshop on Ontology Matching - OM 2022, CEUR Workshop Proceedings 3324, 84-128, 2022.
- Olaf Hartig and Oshani Seneviratne Proceedings of the Doctoral Consortium at the 21st International Semantic Web Conference (ISWC 2022), 2022.
- Blomqvist E, Lindecrantz M, Blomsma F, Lambrix P, De Meester B, Decentralized Digital Twins of Circular Value Networks - A Position Paper, Third International Workshop On Semantic Digital Twins (SeDiT 2022), CEUR Workshop Proceedings 3291, Hersonissos, Greece, 2022.
- Fu B, Lambrix P, Pesquita C, (eds), Proceedings of the Seventh International Workshop on Visualization and Interaction for Ontologies and Linked Data, (Virtual Conference), CEUR Workshop Proceedings Volume 3253, 2022. [VOILA 2022].
- Shahrzad Khayatbashi, Ferrada Sebastian and Olaf Hartig, Converting Property Graphs to RDF: A Preliminary Study of the Practical Impact of Different Mappings, In: GRADES-NDA '22: Proceedings of the 5th ACM SIGMOD Joint International Workshop on Graph Data Management Experiences & Systems (GRADES) and Network Data Analytics (NDA), 2022.
- Lambrix P, Armiento R, Delin A, Li H, FAIR Big Data in the Materials Design Domain, in Zomaya A, Taheri J, Sakr S (eds), Encyclopedia of Big Data Technologies, 2022.
- Li H, Ontology-Driven Data Access and Data Integration with an Application in the Materials Design Domain, PhD thesis, Linköping University, Sweden. doi
2021
- Abd Nikooie Pour M, Algergawy A, Amardeilh F, Amini R, Fallatah O, Faria D, Fundulaki I, Harrow I, Hertling S, Hitzler P, Huschka M, Ibanescu L, Jimenez-Ruiz E, Karam N, Laadhar A, Lambrix P, Li H, Li Y, Michel F, Nasr E, Paulheim H, Pesquita C, Portisch J, Roussey C, Saveta T, Shvaiko P, Splendiani A, Trojahn C, Vatascinova J, Yaman B, Zamazal O, Zhou L, Results of the Ontology Alignment Evaluation Initiative 2021, 16th International Workshop on Ontology Matching - OM 2021 CEUR Workshop Proceedings 3063, 62-108, 2021.
- Abd Nikooie Pour M, Li H, Armiento R, Lambrix P, A First Step towards Extending the Materials Design Ontology, ESWC Workshop on Domain Ontologies for Research Data Management in Industry Commons of Materials and Manufacturing - DORIC-MM 2021, 1-11, Virtual Workshop, 2021.
- Abd Nikooie Pour M, Li H, Armiento R, Lambrix P, A First Step towards a Tool for Extending Ontologies, 6th International Workshop on Visualization and Interaction for Ontologies and Linked Data, 1-12, Virtual Workshop, 2021.
- Dragisic Z, Li Y, Lambrix P, RepOSE-CTab - A Protégé Plugin for Completing Ontologies, 6th International Workshop on Visualization and Interaction for Ontologies and Linked Data, 56-62, Virtual Workshop, 2021.
- Lambrix P, Pesquita C, Wiens V., (eds), Proceedings of the Sixth International Workshop on Visualization and Interaction for Ontologies and Linked Data, (Virtual Conference), CEUR Workshop Proceedings Volume 3023, 2021. [VOILA 2021].
- Li Y, Lambrix P, An approach for repairing incoherent ontologies, Proceedings of the ISWC 2021 Posters, Demos and Industry Tracks: From Novel Ideas to Industrial Practice, CEUR Workshop Proceedings Volume 2980, Virtual conference, 2021. teaser
- Sherif Sakr, Angela Bonifati, Hannes Voigt, Alexandru Iosup, Khaled Ammar, Renzo Angles, Walid G. Aref, Marcelo Arenas, Maciej Besta, Peter A. Boncz, Khuzaima Daudjee, Emanuele Della Valle, Stefania Dumbrava, Olaf Hartig, Bernhard Haslhofer, Tim Hegeman, Jan Hidders, Katja Hose, Adriana Iamnitchi, Vasiliki Kalavri, Hugo Kapp, Wim Martens, M. Tamer Ozsu, Eric Peukert, Stefan Plantikow, Mohamed Ragab, Matei Ripeanu, Semih Salihoglu, Christian Schulz, Petra Selmer, Juan F. Sequeda, Joshua Shinavier, Gabor Szarnyas, Riccardo Tommasini, Antonino Tumeo, Alexandru Uta, Ana Lucia Varbanescu, Hsiang-Yun Wu, Nikolay Yakovets, Da Yan, Eiko Yoneki: The future is big graphs: a community view on graph processing systems. Communications of the ACM, 64(9):62-71, 2021.
2020
- Abd Nikooie Pour M, Algergawy A, Amini R, Faria D, Fundulaki I, Harrow I, Hertling S, Jimenez-Ruiz E, Jonquet C, Karam N, Khiat A, Laadhar A, Lambrix P, Li H, Li Y, Hitzler P, Paulheim H, Pesquita C, Saveta T, Shvaiko P, Splendiani A, Thieblin E, Trojahn C, Vatascinova J, Yaman B, Zamazal O, Zhou L, Results of the Ontology Alignment Evaluation Initiative 2020, 15th International Workshop on Ontology Matching - OM 2020, CEUR Workshop Proceedings Volume 2788, 92-138, Virtual conference (originally planned to be in Athens, Greece), 2020.
- Cheng S, Hartig O, FedQPL: A Language for Logical Query Plans over Heterogeneous Federations of RDF Data Sources, 22nd Int. Conf. on Information Integration and Web-based Applications & Services, 2020. Best paper award.
- Ivanova V, Lambrix P, Pesquita C, Wiens V., (eds), Proceedings of the Fifth International Workshop on Visualization and Interaction for Ontologies and Linked Data, (Virtual Conference, originally planned in Athens, Greece), CEUR Workshop Proceedings Volume 2778, 2020. [VOILA 2020].
- Keskisärkkä R, Blomqvist E, Lind L, Hartig O, Capturing and Querying Uncertainty in RDF Stream Processing, 22nd International Conference on Knowledge Engineering and Knowledge Management, Bozen-Bolzano, Italy, 2020.
- Li H, Armiento R, Lambrix P, An Ontology for the Materials Design Domain, 19th International Semantic Web Conference, LNCS 12507, 212-227, Athens, Greece (Virtual Conference), 2020.
2019
- Algergawy A, Faria D, Ferrara A, Fundulaki I, Harrow I, Hertling S, Jimenez-Ruiz E, Karam N, Khiat A, Lambrix P, Li H, Montanelli S, Paulheim H, Pesquita C, Saveta T, Shvaiko P, Splendiani A, Thieblin E, Trojahn C, Vatascinova J, Zamazal O, Zhou L, Results of the Ontology Alignment Evaluation Initiative 2019, 14th International Workshop on Ontology Matching - OM 2019, CEUR Workshop Proceedings Volume 2536, 46-85, Auckland, New Zealand, 2019.
- Cheng S. and Hartig O.: OPT+: A Monotonic Alternative to OPTIONAL in SPARQL, Journal of Web Engineering, 2019. pre-print
- Dorea F, Vial F, Hammar K, Lindberg A, Lambrix P, Blomqvist E, Revie C, Drivers for the development of an Animal Health Surveillance Ontology (AHSO), Preventive Veterinary Medicine, 166:39-48, 2019.
- Hartig O: Foundations to Query Labeled Property Graphs using SPARQL*. In Proceedings of the 1st International Workshop on Approaches for Making Data Interoperable (AMAR), Karlsruhe, Germany, September 2019.
- Hartig O and Hidders J: Defining Schemas for Property Graphs by using the GraphQL Schema Definition Language. In Proceedings of the 2nd Joint International Workshop on Graph Data Management Experiences & Systems (GRADES) and Network Data Analytics (NDA) (GRADES-NDA'19), Amsterdam, Netherlands, June 2019
- Ivanova V, Lambrix P, Lohmann S, Pesquita C, Visualization and interaction for ontologies and linked data - Editorial, Journal of Web Semantics, Special issue on Visualization and interaction for ontologies and linked data 55:145-149, 2019.
- Keskisärkkä R, Blomqvist E, Lind L, and Hartig O: RSP-QL*: Enabling Statement-Level Annotations in RDF Streams. In Proceedings of the 15th SEMANTiCS Conference, Karlsruhe, Germany, September 2019.
- Keskisärkkä R, Li H, Cheng S, Carlsson N, Lambrix P, An Ontology for Ice Hockey, ISWC 2019 Satellites - Proceedings of the ISWC 2019 Satellite Tracks (Posters & Demonstrations, Industry, and Outrageous Ideas) co-located with 18th International Semantic Web Conference (ISWC 2019), CEUR Workshop Proceedings Volume 2456, 13-16, Auckland, New Zealand, 2019.
- Kim Y W, Consens M P, and Hartig O: An Empirical Analysis of GraphQL API Schemas in Open Code Repositories and Package Registries. In Proceedings of the 13th Alberto Mendelzon International Workshop on Foundations of Data Management (AMW), Asuncion, Paraguay, June 2019.
- Li H, Armiento R, Lambrix P, A Method for Extending Ontologies with Application to the Materials Science Domain, Data Science Journal, 18(1):Article 50, 2019.
- Li H, Armiento R, Lambrix P, Extending Ontologies in the Nanotechnology Domain using Topic Models and Formal Topical Concept Analysis on Unstructured Text, ISWC 2019 Satellites - Proceedings of the ISWC 2019 Satellite Tracks (Posters & Demonstrations, Industry, and Outrageous Ideas) co-located with 18th International Semantic Web Conference (ISWC 2019), CEUR Workshop Proceedings Volume 2456, 5-8, Auckland, New Zealand, 2019.
- Li H, Dragisic Z, Faria D, Ivanova V, Jimenez-Ruiz E, Lambrix P, Pesquita C, User validation in ontology alignment: functional assessment and impact, The Knowledge Engineering Review, 34:e15, 2019. post-print.
2018
- Maribel Acosta, Olaf Hartig, and Juan Sequeda: Federated RDF Query Processing. In Encyclopedia of Big Data Technologies, Springer 2018.
- Algergawy A, Cheatham M, Faria D, Ferrara A, Fundulaki I, Harrow I, Hertling S, Jimenez-Ruiz E, Karam N, Khiat A, Lambrix P, Li H, Montanelli S, Paulheim H, Pesquita C, Saveta T, Schmidt D, Shvaiko P, Splendiani A, Thieblin E, Trojahn S, Vatascinova J, Zamazal O, Zhou L, Results of the Ontology Alignment Evaluation Initiative 2018, International Workshop on Ontology Matching - OM 2018, CEUR Workshop Proceedings Volume 2288, 76-116, Monterey, CA, USA, 2018.
- Olaf Hartig, Ian Letter, and Jorge Pérez: A Model of Distributed Query Computation in Client-Server Scenarios on the Semantic Web. In Proceedings of the 27th International Joint Conference on Artificial Intelligence (IJCAI), Stockholm, Sweden, Jul. 2018.
- Olaf Hartig and Jorge Pérez: Semantics and Complexity of GraphQL. In Proceedings of The Web Conference 2018 (27th International World Wide Web Conference), Lyon, France, Apr. 2018.
- Olaf Hartig, Katja Hose, and Juan Sequeda: Linked Data Management. In Encyclopedia of Big Data Technologies, Springer 2018.
- Valentina Ivanova, Fostering User Involvement in Ontology Alignment and Alignment Evaluation, Linköping Studies in Science and Technology. Dissertations:1891, 2017 (2018).
- Jimenez-Ruiz E, Saveta T, Zamazal O, Hertling S, Röder M, Fundulaki I, Ngonga Ngomo A, Sherif M A, Annane A, Bellahsene Z, Ben Yahia S, Diallo G, Faria D, Kachroudi M, Khiat A, Lambrix P, Li H, Mackeprang M, Mohammadi M, Rybinski M, Sowkarthiga Balasubramani B, Trojahn C, Introducing the HOBBIT platform into the Ontology Alignment Evaluation Campaign, International Workshop on Ontology Matching - OM 2018, CEUR Workshop Proceedings Volume 2288, 49-60, Monterey, CA, USA, 2018.
- Lambrix P, Armiento R, Delin A, Li H, Big Semantic Data Processing in the Materials Design Domain, in Sakr and Zomaya (eds), Encyclopedia of Big Data Technologies, Springer. ISBN: 978-3-319-63962-8
- Pesquita C, Ivanova V, Lohmann S, Lambrix P, A Framework to Conduct and Report on Empirical User Studies in Semantic Web Contexts, 21st International Conference on Knowledge Engineering and Knowledge Management - EKAW 2018, LNCS 11313, 567-583, Nancy, France, 2018.
- Saleem M, Potocki A, Soru T, Hartig O, and Ngonga Ngomo A-C: CostFed: Cost-Based Query Optimization for SPARQL Endpoint Federation. In Proceedings of the 14th International Conference on Semantic Systems (SEMANTICS), Vienna, Austria, Sep. 2018. Best paper award
2017
- Achichi M, Cheatham M, Dragisic Z, Euzenat J, Faria D, Ferrara A, Flouris G, Fundulaki I, Harrow I, Ivanova V, Jimenez-Ruiz E, Kolthoff K, Kuss E, Lambrix P, Leopold H, Li H, Meilicke C, Mohammadi M, Montanelli S, Pesquita C, Saveta T, Shvaiko P, Splendiani A, Stuckenschmidt H, Thieblin E, Todorov K, Trojahn C, Zamazal O, Results of the Ontology Alignment Evaluation Initiative 2017, International Workshop on Ontology Matching - OM 2017, CEUR Workshop Proceedings Volume 2032, 61-113, Vienna, Austria, 2017.
- Dragisic Z, Ivanova V, Li H, Lambrix P, Experiences from the Anatomy track in the Ontology Alignment Evaluation Initiative, Journal of Biomedical Semantics 8:56, 2017.
- Zlatan Dragisic, Completion of Ontologies and Ontology Networks, Linköping Studies in Science and Technology. Dissertations:1852, 2017.
- Karl Hammar, Content Ontology Design Patterns: Qualities, Methods and Tools, Linköping Studies in Science and Technology. Dissertations:1879, 2017.
- Olaf Hartig: Foundations of RDF* and SPARQL* - An Alternative Approach to Statement-Level Metadata in RDF. In Proceedings of the 11th Alberto Mendelzon International Workshop on Foundations of Data Management (AMW), Montevideo, Uruguay, Jun. 2017.
- Olaf Hartig, Ian Letter, and Jorge Pérez: A Formal Framework for Comparing Linked Data Fragments. In Proceedings of the 16th International Semantic Web Conference (ISWC), Vienna, Austria, Oct. 2017. Best paper award
- Olaf Hartig and Jorge Pérez: An Initial Analysis of Facebook's GraphQL Language. In Proceedings of the 11th Alberto Mendelzon International Workshop on Foundations of Data Management (AMW), Montevideo, Uruguay, Jun. 2017.
- Olaf Hartig and Giuseppe Pirro: SPARQL with Property Paths on the Web, Semantic Web Journal, 8(6):773-795, 2017. pre-print.
- Ivanova V, Bach B, Pietriga E, Lambrix P, Alignment Cubes: Towards Interactive Visual Exploration and Evaluation of Multiple Ontology Alignments, 16th International Semantic Web Conference, LNCS 10587, 400-417, Vienna, Austria, 2017.
- Lambrix P, Kaliyaperumal R, A Session-based Ontology Alignment Approach enabling User Involvement, Semantic Web Journal, 8(2):225-251, 2017. post-print.
- Sundvall E, Wei-Kleiner F, Freire SM, Lambrix P, Querying archetype-based Electronic Health Records using Hadoop and Dewey encoding of openEHR models, Studies in Health Technology and Informatics Vol 235: Informatics for Health: Connected Citizen-Led Wellness and Population Health, 406-410, Manchester, UK, 2017.
- Zhang Z, Gentile A, Blomqvist E, Augenstein I, Ciravegna F, An unsupervised data-driven method to discover equivalent relations in large Linked Datasets, Semantic Web Journal, 8(2):197-223, 2017.
2016
- Achichi M, Cheatham M, Dragisic Z, Euzenat J, Faria D, Ferrara A, Flouris G, Fundulaki I, Harrow I, Ivanova V, Jimenez-Ruiz E, Kuss E, Lambrix P, Leopold H, Li H, Meilicke C, Montanelli S, Pesquita C, Saveta T, Shvaiko P, Splendiani A, Stuckenschmidt H, Todorov K, Trojahn C, Zamazal O, Results of the Ontology Alignment Evaluation Initiative 2016, International Workshop on Ontology Matching - OM 2016, CEUR Workshop Proceedings Volume 1766, 73-129, Kobe, Japan, 2016.
- Hartig O. and Pérez J.: LDQL: A Query Language for the Web of Linked Data Journal of Web Semantics 41, pages 9-29, 2016. pre-print
- Freire SM, Teodoro D, Wei-Kleiner F, Sundvall E, Karlsson D, Lambrix P, Comparing the Performance of NoSQL Approaches for Managing Archetype-Based Electronic Health Record Data, PLoS ONE 11(3): e0150069, 2016.
- Hartig O. and Pirro G.: SPARQL with Property Paths on the Web. Semantic Web Journal, 2016. pre-print.
- Dragisic Z, Ivanova V, Lambrix P, Faria D, Jimenez-Ruiz E, Pesquita C, User validation in ontology alignment, 15th International Semantic Web Conference, LNCS 9981, 200-217, Kobe, Japan, 2016. post-print.
- Lambrix P, Dragisic Z, Ivanova V, Anslow C, Visualization for Ontology Evolution, 2nd International Workshop on Visualization and Interaction for Ontologies and Linked Data, CEUR Workshop Proceedings Volume 1545, 54-67, Kobe, Japan, 2016. slides.
- Hartig O. and Buil-Aranda C.: Reducing the Network Load of Triple Pattern Fragments by Supporting Bind Joins. In Poster and Demo Proceedings of the 15th International Semantic Web Conference (ISWC), Kobe, Japan, 2016. pre-print.
- Olaf Hartig and Carlos Buil-Aranda: Bindings-Restricted Triple Pattern Fragments. Proceedings of the 15th International Conference on Ontologies, Databases, and Applications of Semantics (ODBASE), Rhodes, Greece, 2016. extended pre-print.
- Hartig O. and Özsu M. T.: Walking without a Map: Ranking-Based Traversal for Querying Linked Data. In Proceedings of the 15th International Semantic Web Conference (ISWC), Kobe, Japan, 2016. pre-print.
- Ivanova V, Applications of Large Displays: Advancing User Support in Large Scale Ontology Alignment, 15th International Semantic Web Conference - Doctoral Consortium, Kobe, Japan, 2016.
- Magnus Knuth, Olaf Hartig, and Harald Sack: Scheduling Refresh Queries for Keeping Results from a SPARQL Endpoint Up-to-Date. Proceedings of the 15th International Conference on Ontologies, Databases, and Applications of Semantics (ODBASE), Rhodes, Greece, 2016. pre- print.
2015
- Lambrix P, Wei-Kleiner F, Dragisic Z, Completing the is-a structure in light-weight ontologies, Journal of Biomedical Semantics 6:12, 2015.
- Cheatham M, Dragisic Z, Euzenat J, Faria D, Ferrara A, Flouris G, Fundulaki I, Granada R, Ivanova V, Jimenez-Ruiz E, Lambrix P, Montanelli S, Pesquita C, Saveta T, Shvaiko P, Solimando A, Trojahn C, Zamazal O, Results of the Ontology Alignment Evaluation Initiative 2015, International Workshop on Ontology Matching - OM 2015, CEUR Workshop Proceedings Volume 1545, 60-115, Bethlehem, PA, USA, 2015.
- Chiatti A, Dragisic Z, Cerquitelli T, Lambrix P, Reducing the search space in ontology alignment using clustering techniques and topic identification, 8th International Conference on Knowledge Capture, Article No. 21, Palisades, NY, USA, 2015.
- Dragisic Z, Lambrix P, Blomqvist E, Integrating Ontology Debugging and Matching into the eXtreme Design Methodology, 6th Workshop on Ontology and Semantic Web Patterns, Bethlehem, Pennsylvania, USA, 2015.
- Ivanova V, Kauppinen T, Lohmann S, Mazumdar S, Pesquita C, Xu K, Introduction to VISUAL 2014 - Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics, , Knowledge Engineering and Knowledge Management - EKAW 2014 Satellite Events, VISUAL, EKM1, and ARCOE-Logic. Revised Selected Papers. LNAI 8982, Springer Verlag, 2015.
- Ivanova V, Lambrix P, Åberg J, Requirements for and Evaluation of User Support for Large-Scale Ontology Alignment, 12th Extended Semantic Web Conference - ESWC 2015, LNCS 9088, 3-20, Portoroz, Slovenia, 2015. post-print.
- Paulheim H, Lehmann J, Svatek V, Knoblock C, Horridge M, Lambrix P, Parsia B, (eds), Joint Proceedings of 5th Workshop on Data Mining and Knowledge Discovery meets Linked Open Data (Know@LOD 2016) and 1st International Workshop on Completing and Debugging the Semantic Web (CoDeS 2016), (Heraklion, Greece), CEUR Workshop Proceedings Volume 1586, 2016. [CoDeS 2016].
2014
- Blomqvist, E.: The Use of Semantic Web Technologies for Decision Support - A Survey. In: Semantic Web Journal, 5(3): 177-201, IOS Press, 2014.
- Timpka, T., Spreco, A., Dahlström, Ö., Eriksson, O., Gursky, E., Ekberg, J., Blomqvist, E., Strömgren, M., Karlsson, D., Eriksson, H., Nyce, J., Hinkula, J., and Holm, E.: Performance of eHealth Data Sources in Local Influenza Surveillance: A 5-Year Open Cohort Study. In: Journal of Medical Internet Research, 16(4):e116, 2014.
- Lambrix P, Semantic Web, Ontologies and Linked Data, chapter 6.05 in Brahme (ed in chief), Persson, (ed), Comprehensive Biomedical Physics, Volume 6: Bioinformatics, 67-76, Elsevier, 2014. ISBN: 978-0-444-53633-4. publisher's book page.
- Dragisic Z, Eckert K, Euzenat J, Faria D, Ferrara A, Granada R, Ivanova V, Jimenez-Ruiz E, Kempf A, Lambrix P, Montanelli S, Paulheim H, Ritze D, Shvaiko P, Solimando A, Trojahn C, Zamazal O, Cuenca Grau B, Results of the Ontology Alignment Evaluation Initiative 2014, International Workshop on Ontology Matching - OM 2014, CEUR Workshop Proceedings Volume 1317, 61-104, Riva del Garda, Trentino, Italy, 2014.
- Dragisic Z, Lambrix P, Wei-Kleiner F, Completing the is-a structure of biomedical ontologies, Proceedings of the 10th International Conference on Data Integration in the Life Sciences, LNBI 8574, 66-80, Lisbon, Portugal, 2014.
- Dragisic Z, Lambrix P, Wei-Kleiner F, A System for Debugging Missing Is-a Structure in EL Ontologies, Proceedings of the 3rd International Workshop on Debugging Ontologies and Ontology Mappings, CEUR Workshop Proceedings Volume 1162, 51-58, Anissaras/Hersonissou, Greece, 2014. [Demonstration paper.]
- Ivanova V, Lambrix P, User involvement for large-scale ontology alignment, International Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics, CEUR Workshop Proceedings Volume 1299, 34-47, Linköping, Sweden, 2014.
- Wei-Kleiner F, Dragisic Z, Lambrix P, Abduction Framework for Repairing Incomplete EL Ontologies: Complexity Results and Algorithms, Proceedings of the 28th AAAI Conference on Artificial Intelligence, 1120-1127, Quebec, Canada, 2014. extended version.
2013
- Blomqvist, E., Zhang, Z., Gentile, A. L., Augenstein, I., and Ciravegna, F.: Statistical Knowledge Patterns for Characterizing Linked Data. In: Proceedings of the Workshop on Ontology and Semantic Web Patterns (4th edition) - WOP2013, CEUR workshop proceedings, 2013.
- Keskisärkkä, R. and Blomqvist E.: Semantic Complex Event Processing for Social Media Monitoring - A Survey. To appear in: Proceedings of Social Media and Linked Data for Emergency Response (SMILE) Co-located with the 10th Extended Semantic Web Conference - May 26-30, 2013 at Montpellier, France, CEUR workshop proceedings, 2013.
- Keskisärkkä, R. and Blomqvist E.: Event Object Boundaries in RDF Streams: A Position Paper. In: Proceedings of OrdRing 2013 - 2nd International Workshop on Ordering and Reasoning, CEUR workshop proceedings, 2013.
- Rinne, M., Blomqvist, E., Keskisärkkä, R., and Nuutila, E.: Event Processing in RDF. In: Proceedings of the Workshop on Ontology and Semantic Web Patterns (4th edition) - WOP2013, CEUR workshop proceedings, 2013.
- Zhang, Z., Gentile, A. L., Augenstein, I., Blomqvist, E., and Ciravegna, F.: Mining Equivalent Relations from Linked Data. In: Proceedings of the annual meeting of the Association for Computational Linguistics (ACL) 2013 (short papers).
- Zhang, Z., Gentile, A. L., Blomqvist, E., Augenstein, I., and Ciravegna, F.: Statistical Knowledge Patterns: Identifying Synonymous Relations in Large Linked Datasets. In: Proceedings of the 12th International Semantic Web Conference, 21-25 October 2013, Sydney, Australia. Lecture Notes in Computer Science, Springer, 2013.
- Klingström T, Soldatova L, Stevens R, Roos, TE, Swertz MA, Müller KM, Kalas M, Lambrix P, Taussig M, Litton J-E, Landegren U, Bongcam-Rudloff E, Workshop on laboratory protocol standards for the molecular methods database, New Biotechnology, 30(2):109-113, 2013.
- Lambrix P, Ivanova V, A unified approach for debugging is-a structure and mappings in networked taxonomies, Journal of Biomedical Semantics 4:10, 2013.
- Lambrix P, Liu Q, Debugging the missing is-a structure within taxonomies networked by partial reference alignments, Data & Knowledge Engineering 86:179-205, 2013. post-print.
- Meier M, Schmidt M, Wei F, Lausen G, Semantic query optimization in the presence of types, Journal of Computer and System Sciences 79(6):937-957, 2013.
- Ivanova V, Lambrix P, A System for Aligning Taxonomies and Debugging Taxonomies and Their Alignments, Video Journal of Semantic Data Management Abstracts, Volume 2, 2013.
- Cuenca Grau B, Dragisic Z, Eckert K, Euzenat J, Ferrara A, Granada R, Ivanova V, Jimenez-Ruiz E, Kempf A, Lambrix P, Nikolov A, Paulheim H, Ritze D, Scharffe F, Shvaiko P, Trojahn C, Zamazal O, Results of the Ontology Alignment Evaluation Initiative 2013, International Workshop on Ontology Matching - OM 2013,CEUR Workshop Proceedings Volume 1111, 61- 100, Sydney, Australia, 2013.
- Ivanova V, Lambrix P, A unified approach for aligning taxonomies and debugging taxonomies and their alignments, Tenth Extended Semantic Web Conference - ESWC 2013, LNCS 7882, 1-15, Montpellier, France, 2013. slides, video, post-print.
- Ivanova V, Lambrix P, A system for aligning taxonomies and debugging taxonomies and their alignments, Tenth Extended Semantic Web Conference - ESWC 2013 Satellite Events, LNCS 7955, 152-156, Montpellier, France, 2013. [Demonstration paper.] © Springer-Verlag.
- Lambrix P, Kaliyaperumal R, A Session-based Approach for Aligning Large Ontologies, Tenth Extended Semantic Web Conference - ESWC 2013, LNCS 7882, 46-60, Montpellier, France, 2013. slides, video, post-print.
- Lambrix P, Wei-Kleiner F, Dragisic Z, Ivanova V, Repairing missing is-a structure in ontologies is an abductive reasoning problem. Second International Workshop on Debugging Ontologies and Ontology Mappings, CEUR Workshop Proceedings Volume 999, 33-44, Montpellier, France, 2013.
2012
- Blomqvist E., Seil Sepour A., and Presutti V.: Ontology Testing - Methodology and Tool. In: Knowledge Engineering and Knowledge Management - 18th International Conference, EKAW 2012, Galway City, Ireland, October 8-12, 2012. Proceedings. Lecture Notes in Computer Science, Vol. 7603, pp. 216-226, Springer.
- Presutti V., Blomqvist E., Daga E., and Gangemi A.: Pattern-based Ontology Design. In: Ontology Engineering in a Networked World (Chapter 3), Springer, 2012.
- Lambrix P, Ivanova V, Dragisic Z, Contributions of LiU/ADIT to Debugging Ontologies and Ontology Mappings, in Lambrix, (ed), Advances in Secure and Networked Information Systems - The ADIT Perspective, 109-120, LiU Tryck / LiU Electronic Press, 2012. publisher's book page.
- Lambrix P, Kaliyaperumal R, Contributions of LiU/ADIT to Ontology Alignment, in Lambrix, (ed), Advances in Secure and Networked Information Systems - The ADIT Perspective, 97-108, LiU Tryck / LiU Electronic Press, 2012. publisher's book page.
- Freire S, Sundvall E, Karlsson D, Lambrix P, Performance of XML Databases for Epidemiological Queries in Archetype-Based EHRs, Scandinavian Conference on Health Informatics, 51-57, Linköping, Sweden, 2012.
- Ivanova V, Lambrix P, A System for Debugging Taxonomies and their Alignments, First International Workshop on Debugging Ontologies and Ontology Mappings, 37-42, Galway, Ireland, 2012. Demonstration.
- Ivanova V, Laurila Bergman J, Hammerling U, Lambrix P, Debugging Taxonomies and their Alignments: the ToxOntology - MeSH Use Case, First International Workshop on Debugging Ontologies and Ontology Mappings, 25-36, Galway, Ireland, 2012.
- Lambrix P, Dragisic Z, Ivanova V, Get my pizza right: Repairing missing is-a relations in ALC ontologies, Second Joint International Semantic Technology Conference, LNCS 7774, 17-32, Nara, Japan, 2012. extended version, slides.
- Tan H, Kaliyaperumal R, Benis N, 'Ontology-driven Construction of Corpus with Frame Semantics Annotations'. A. Gelbukh (Ed.): CICLing 2012, Part I, LNCS 7181, pp. 54--65. Springer, Heidelberg (2012)
2011
- Gangemi A., Presutti V., and Blomqvist E.: The Computational Ontology Perspective: Design Patterns for Web Ontologies. In: Approaches to Legal Ontologies, Law, Governance and Technology Series, Volume 1 (Chapter 12), Springer, 2011.
- Strömbäck L, Freire J, (2011) 'XML Management for Bioinformatics Applications'. Computing in Science and Engineering 13(5):12-22, 2011.
- Strömbäck L, Ivanova V, Hall D, Using Statistical Information for Efficient Design and Evaluation of Hybrid XML Storage, International Journal On Advances in Software 4(3-4):389-400, 2011.
- Ivanova V, Strömbäck L, Creating infrastructure for tool-independent querying and exploitation of scientific workflows, 7th IEEE International Conference on e-Science, Stockholm, Sweden, 2011.
- Lambrix P, A framework for session-based ontology alignment, Sixth International Workshop on Ontology Matching - OM 2011 , Bonn, Germany, 2011.
- Lambrix P, Liu Q, Debugging is-a structure in networked taxonomies, Proceedings of the Fourth International Workshop on Semantic Web Applications and Tools for Life Sciences - SWAT4LS11, 58-65, London, UK, 2011.
- Lambrix P, Liu Q, RepOSE: A System for Debugging is-a Structure in Networked Taxonomies, Demo at the 10th International Semantic Web Conference - ISWC 2011, Bonn, Germany, 2011.
- Strömbäck L, Ivanova V, Hall D (2011) 'Exploring Statistical Information for Applications-Specific Design and Evaluation of Hybrid XML storage'. Databases, Knowledge, and Data Applications DBKDA 2011, published by IEEE, January 2011, St Maarten, The Netherlands.
- He Tan, Rajaram Kaliyaperumal, Nirupama Benis, Building frame-based corpus on the basis of ontological domain knowledge, Proceedings of the Workshop on BioNLP, 74-82, Portland, Oregon, USA, 2011.
- Tan H, Kaliyaperumal R, Benis N, 'Ontology-driven Construction of Corpus with Frame Semantics Annotations'. poster at The Fourth International Symposium on Languages in Biology and Medicine (LBM 2011). Singapore, 2011.
2010
- Blomqvist E.: Ontology Patterns - Typology and Experiences from Design Pattern Development. In: Proceedings of SAIS 2010, Uppsala, May 20-21, 2010.
- Blomqvist E., Ceruti M., Waters J., and McGarry D.: A Decision-making Format for the Semantic Web. In: Proceedings of the 2nd International Workshop on Ontology Patterns - WOP2010, ISWC2010 Workshops Volume VIII, CEUR workshop proceedings, Vol-671, 2010.
- Blomqvist E., Presutti V., Daga E., and Gangemi A.: Experimenting with eXtreme Design. In: Proceedings of EKAW 2010 - Knowledge Engineering and Knowledge Management by the Masses, Lisbon, October 11-15, Lecture Notes in Computer Science, Springer, 2010.
- Khan M. T. and Blomqvist E.: Ontology Design Pattern Detection - Initial Method and Usage Scenarios. In: Proceedings of the Fourth International Conference on Advances in Semantic Processing (SEMAPRO 2010). XPS, ThinkMind Digital Library, 2010.
- Åsberg M, Strömbäck L (2010) 'Bioinformatics: From Disparate Web Services to Semantics and Interoperability.' International Journal of Advances in Software, 3(3-4):396-406. Invited contribution.
- David Hall, Lena Strömbäck: Generation of Synthetic XML for Evaluation of Hybrid XML Systems. DASFAA Workshops 2010: 191-202
- Liu Q, Lambrix P, A system for debugging missing is-a structure in networked ontologies, Proceedings of the Seventh International Conference on Data Integration in the Life Sciences - DILS 2010, LNBI 6254, 50-57, Gothenburg, Sweden, 2010. © Springer-Verlag.
- Liu Q, Lambrix P, Debugging the missing is-a structure of networked ontologies, Proceedings of the 7th Extended Semantic Web Conference - ESWC10, Part II, LNCS 6089, 478-482, Heraklion, Greece, 2010.
- Tan H, A study on the relation between linguistics-oriented and domain-specific semantics, Proceedings of the 3rd International Workshop on Semantic Web Applications and Tools for the Life Sciences, Berlin,Germany, December 8-10, 2010.
- Mikael Asberg, Lena Strömbäck: Interoperable and Easy-to-Use Web Services for the Bioinformatics Community - A Case Study. DBKDA 2010: 16-21
2009
- Blomqvist E.: OntoCase-Automatic Ontology Enrichment Based on Ontology Design Patterns. In: The Semantic Web - ISWC 2009, 8th International Semantic Web Conference, ISWC 2009, Chantilly, VA, USA, October 25-29, 2009. Proceedings. pp. 65-80, Lecture Notes in Computer Science, Springer, 2009.
- Presutti V., Daga E., Gangemi A., and Blomqvist E.: eXtreme Design with Content Ontology Design Patterns. In: Proceedings of the Workshop on Ontology Patterns (WOP 2009), collocated with the 8th International Semantic Web Conference (ISWC-2009), Washington D.C., USA, 25 October, 2009. CEUR workshop proceedings, Vol-516, 2009.
- Blomqvist E., Gangemi A. and Presutti V.: Experiments on pattern-based ontology design. In: Proceedings of the 5th International Conference on Knowledge Capture (K-CAP 2009), September 1-4, 2009, Redondo Beach, California, USA. pp. 41-48, ACM, 2009.
- Lambrix P, Strömbäck L, Tan H, Information integration in bioinformatics with ontologies and standards, chapter 8 in Bry, Maluszynski, (eds), Semantic Techniques for the Web: The REWERSE perspective, LNCS 5500, 343-376, Springer, 2009. ISBN: 978-3-642-04580-6. publisher's book page.
- Baker C, Lambrix P, Laurila Bergman J, Kanagasabai R, Ang WT, Slicing through the scientific literature, Proceedings of the 6th International Workshop on Data Integration in the Life Sciences - DILS09, LNBI 5647, 127-140, Manchester, UK, 2009. slides.
- Ellkvist, T, Koop, D, Freire, J, Silva, C T, and Strömbäck, L (2009) Using Mediation to Achieve Provenance Interoperability, In IEEE International Workshop on Scientific Workflows, 2009.
- Ellkvist, T, Lena Strömbäck, L, Didier Lins, L, and Freire J (2009) A First Study on Strategies for Generating Workflow Snippets. The first International Workshop on Keyword Search on structured data KEYS 2009, Collocated with ACM SIGMOD/PODS, June 28th, 2009, Providence, Rhode Island, USA
- Lambrix P, Liu Q, Using partial reference alignments to align ontologies, Proceedings of the 6th European Semantic Web Conference - ESWC09, LNCS 5554, 188-202, Heraklion, Greece, 2009. slides, video.
- Lambrix P, Liu Q, Tan H, Repairing the missing is-a structure of ontologies, Proceedings of the 4th Asian Semantic Web Conference - ASWC09, LNCS 5926, 76-90, Shanghai, China, 2009.
- Lambrix P, Liu Q, Tan H, RepOSE: an environment for repairing missing ontological structure, Proceedings of the 4th Asian Semantic Web Conference - ASWC09, LNCS 5926, 365-366, Shanghai, China, 2009.
- Lambrix P, Liu Q, Tan H, A system for repairing missing is-a structure in ontologies, Semantic Web Applications and Tools for Life Sciences - SWAT4LS09, Amsterdam, Netherlands, 2009.
- Lambrix P, Liu Q, Tan H, Aligning Anatomy Ontologies in the Ontology Alignment Evaluation Initiative, 25th Workshop of the Swedish Artificial Intelligence Society, 13-20, Linköping, Sweden, 2009.
- Strömbäck, L, Schmidt S (2009) An Extension of XQuery for Graph Analysis of Biological, Proc. The First International Conference on Advances in Databases, Knowledge, and Data Applications, DBKDA 2009, March 1-6, 2009, Cancun, Mexico Best paper award
- Strömbäck, L, Åsberg, M, Hall, D (2009) HShreX: a Tool for Design and Evaluation of Hybrid XML Storage, FLexDBIST 2009, Linz Austria.
- Tan H, Lambrix P, Selecting an Ontology for Biomedical Text Mining, Proceedings of the Workshop on BioNLP, 55-62, Boulder, Colorado, USA, 2009.
2008
- Blomqvist, E.: Case-based Reasoning for Ontology Engineering. In: Proceedings of The 10th Scandinavian Conference on Artificial Intelligence (SCAI 2008), Stockholm, May 26-28, IOS Press, 2008.
- Blomqvist E.: Pattern Ranking for Semi-automatic Ontology Construction. In: Proceedings of SAC'08: Track on Semantic Web and Applications (SWA), Fortaleza, Ceara, Brazil, March 16-20, ACM, 2008.
- Blomqvist, E. and Öhgren, A.: Constructing an enterprise ontology for an automotive supplier. In: Engineering applications of artificial intelligence, Volume 21, Issue 3, pp.386-397, Elsevier, 2008.
- Blomqvist, E., Öhgren, A. and Sandkuhl, K.: Comparing and Evaluating Ontology Construction in an Enterprise Context. In: Lecture Notes in Business Information Processing - Enterprise Information, Volume 3, pp.221-240, Springer, 2008.
- Ricklefs, M. and Blomqvist, E.: Ontology-based relevance assessment - An evaluation of different semantic similarity measures. In: Proc. of OTM 2008: ODBASE - The 7th International Conference on Ontologies, DataBases, and Applications of Semantics, Monterrey, Mexico, Nov.10-14, Springer, 2008.
- Lambrix P, Tan H, `Ontology alignment and merging', chapter 6 in Burger, Davidson, Baldock, (eds), Anatomy Ontologies for Bioinformatics: Principles and Practice, pp 133-150, Springer, 2008. ISBN: 978-1-84628-884-5. publisher's book page.
- Ellqvist T, Freire J, Koop D, Silva C, Strömbäck L (2008) Using Mediation to Achieve Provenance Interoperability
Proc. 4th IEEE International Conference on e-Science
- Tommy Ellkvist, David Koop, Erik W. Anderson, Juliana Freire, and Claudio Silva, Using Provenance to Support Real-Time Collaborative Design of Workflow, Proceedings of the International Provenance and Annotation Workshop (IPAW), June 17-18, 2008, Salt Lake City.
- Köhn D, Strömbäck L (2008) 'A method for Semi-automatic Standard Integration in Systems Biology', Proc. 19th Intern. Conf. on Database and Expert Systems Applications, pp 745 - 752, Turin, Italy, paper, DOI 10.1007/978-3-540-85654-2_66
- Lambrix P, Tan H, Liu Q, 'SAMBO and SAMBOdtf results for the Ontology Alignment Evaluation Initiative 2008', Proceedings of the Third International Workshop on Ontology Matching, 190-198, Karlsruhe, Germany, 2008.
- Lambrix P, Tan H, Xu W, 'Literature-based alignment of ontologies'. Proceedings of the Third International Workshop on Ontology Matching, 219-223, Karlsruhe, Germany, 2008. extended version.
- Strömbäck, L Eifrem E, Faraglia P (2008)
'Custmizable XML Management on a Navigational Database Framework',
Proc. 19th International Workshop on Database and Expert Systems Applications, Turin, Italy pp 261 - 265, paper, DOI 10.1109/DEXA.2008.48
- Tan H, 'Knowledge-based Gene Symbol Disambiguation'. Second International Workshop on Data and Text Mining in Bioinformatics, 73-76, Napa Valley, California, USA, 2008.
2007
- Albertsen, T. and Blomqvist, E.: Describing Ontology Applications. In: Proceedings of the 4th European Semantic Web Conference (ESWC07), Innsbruck, Austria, June 3-7, Springer, 2007.
- Billig, A., Blomqvist, E. and Lin, F.: Semantic Matching based on Enterprise Ontologies. In: Proceedings of OTM 2007: ODBASE - The 6th International Conference on Ontologies, DataBases, and Applications of Semantics, Vilamoura, Algarve, Portugal, November 25-30, Springer, 2007.
- Blomqvist, E.: OntoCase - A Pattern-based Ontology Construction Approach. In: Proc. of OTM 2007: ODBASE - The 6th International Conference on Ontologies, DataBases, and Applications of Semantics, Vilamoura, Algarve, Portugal, November 25-30, Springer, 2007.
- Blomqvist, E.: Semi-automatic Ontology Engineering using Patterns. In: Proc. of ISWC07 Doctoral Consortium, Busan, Korea, Nov. 11-15, Springer, 2007.
- Blomqvist, E.: Pattern-based Ontology Construction. In: Proc. of the Knowledge Web PhD Symposium 2007, Innsbruck, Austria, June 2007.
- Jakoniene V, Lambrix P, `A Tool for Evaluating Strategies for Grouping of Biological Data', Journal of Integrative Bioinformatics, special issue on the 4th Integrative Bioinformatics Workshop, 4(3):83, 2007.
- Lambrix P, Tan H, `A Tool for Evaluating Ontology Alignment Strategies', Journal on Data Semantics, LNCS 4380, VIII:182-202, 2007. © Springer-Verlag. pre-print.
- Strömbäck L, Hall D, Lambrix P, `A review of standards for data exchange within systems biology', Proteomics, 7(6):857-867, 2007. Invited contribution.
- Lambrix P, Tan H, Jakoniene V, Strömbäck L, `Biological Ontologies', chapter 4 in Baker, Cheung, (eds), Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, pp 85-99, Springer, 2007. ISBN-10: 0-387-48436-1, ISBN-13: 978-0-387-48436-5. publisher's book page.
- Tan H, Lambrix P, `A method for recommending ontology alignment strategies', Proceedings of the 6th International Semantic Web Conference, LNCS 4825, pp 494-507 Busan, Korea, 2007.
- Tan H, Lambrix P, 'SAMBO results for the Ontology Alignment Evaluation Initiative 2007', Proceedings of the Second International Workshop on Ontology Matching, pp 236-243, Busan, Korea, 2007.
2006
- Blomqvist, E. and Öhgren, A.: Constructing an Enterprise Ontology for an Automotive Supplier. In: Proceedings of 12th IFAC Symposium on Information Control Problems in Manufacturing, Saint-Etienne, France, May 2006.
- Blomqvist, E., Öhgren, A. and Sandkuhl, K.: Ontology Construction in an Enterprise context: Comparing and Evaluating two Approaches. In: Proceedings of 8th International Conference on Enterprise Information Systems, Paphos, Cyprus, May 2006.
- Lambrix P, Tan H, `SAMBO - A System for Aligning and Merging Biomedical Ontologies', Journal of Web Semantics, Special issue on Semantic Web for the Life Sciences, 4(3):196-206, 2006. pre-print.
- Strömbäck L, Jakoniene V, Tan H, Lambrix P, `Representing, storing and accessing molecular interaction data: a review of models and tools', Briefings in Bioinformatics, 7(4):331-338, 2006. Invited contribution.
- Sauro H M, Uhrmacher A M, Harel D, Hucka M, Kwiatkowska M, Mendes P, Shaffer C A, Strömbäck L, Tyson J J. (2006) Challenges for Modeling and Simulation Methods in Systems Biology. In: Track on Modeling and Simulation in Computational Biology at the Winter Simulation Conference 2006 , paper, DOI 10.1109/WSC.2006.322948
- Strömbäck, L. (2006) A classification for comparing standardized XML data. Proc. 17th International Workshop on Database and Expert Systems Applications (DEXA'06), pp 517-521, Krakow, Poland, September 2006, paper, DOI 10.1109/DEXA.2006.5
- Strömbäck, L. (2006) A method for alignment of standardised XML information within systems biology. Winter Simulation 2006 In: Track on Modeling and Simulation in Computational Biology at the Winter Simulation Conference 2006 , paper, DOI 10.1109/WSC.2006.322933
- Strömbäck, L, Hall, D. (2006) An evaluation of the Use of XML for Representation, Querying, and Analysis of Molecular Interactions. In T. Grust et. al. (Editors) Current Trends in Database Technology - EDBT 2006 Workshops. LNSC 4254, Springer verlag, paper, DOI 10.1007/11896548_20
- Aberg C, Aberg J, Lambrix P, Shahmehri N, `A Platform to Evaluate the Technology for Service Discovery in the Semantic Web', Proceedings of the Twenty-First National Conference on Artificial Intelligence - AAAI-2006, pp 1253-1258, Boston, MA, USA, 2006. © AAAI.
- Chen B, Tan H, Lambrix P, `Structure-based filtering for ontology alignment', Proceedings of the IEEE WETICE Workshop on Semantic Technologies in Collaborative Applications, pp 364-369, 2006.
- Doms A, Jakoniene V, Lambrix P, Schroeder M, Wächter T, `Ontologies and Text Mining as a Basis for a Semantic Web for the Life Sciences', Reasoning Web, Second International Summer School, LNCS 4126, pp 164-183, 2006. © Springer-Verlag.
- Jakoniene V, Rundqvist D, Lambrix P, `A method for similarity-based grouping of biological data', Proceedings of the 3rd International Workshop on Data Integration in the Life Sciences - DILS06, LNBI 4075, pp 136-151, Hinxton, UK, 2006. © Springer-Verlag.
- Tan H, Jakoniene V, Lambrix P, Aberg J, Shahmehri N, `Alignment of Biomedical Ontologies using Life Science Literature', Proceedings of the International Workshop on Knowledge Discovery in Life Science Literature, LNBI 3886, pp 1-17, Singapore, 2006. © Springer-Verlag.
- Wächter T, Tan H, Wobst A, Lambrix P, Schroeder M, `A Corpus-driven Approach for Design, Evolution and Alignment of Ontologies', Proceedings of the Winter Simulation Conference, pp 1595-1602, 2006. Invited contribution.
2005
- Blomqvist, E.: Fully Automatic Construction of Enterprise Ontologies Using Design Patterns: Initial Method and First Experiences. In: Proc. of OTM 2005: ODBASE the 4th International Conference on Ontologies, Data Bases, and Applications of Semantics, Agia Napa, Cyprus, Oct 31- Nov 4, Springer, 2005.
- Blomqvist, E., Levashova, T., Öhgren, A., Sandkuhl, K. and Smirnov, A.: Formation of Enterprise Networks for Collaborative Engineering. In: Post-conference proceedings of 3. International Workshop on Collaborative Engineering, Sopron, Hungary, April 2005.
- Blomqvist, E., Levashova, T., Öhgren, A., Sandkuhl, K., Smirnov, A. and Tarassov, V.: Configuration of Dynamic SME Supply Chains Based on Ontologies. In: Proc. of the 2nd Intl Conference on Industrial Applications of Holonic and Multi-Agent Systems. Copenhagen, Denmark, Aug.2005.
- Blomqvist, E. and Sandkuhl, K.: Patterns in Ontology Engineering - Classification of Ontology Patterns. In: Proc. of the 7th International Conference on Enterprise Information Systems, Miami, USA, May 2005.
- Thörn, C., Eriksson, Ö., Blomqvist, E. and Sandkuhl, K.: Potentials and Limits of Graph-Algorithms for Discovering Ontology Patterns. In: Proc. of the International Conference on Intelligent Agents, Web Technology and Internet Commerce - IAWTIC'2005, Wien, Austria, Nov. 2005.
- Strömbäck L, Lambrix P, `Representations of molecular pathways: An evaluation of SBML, PSI MI and BioPAX', Bioinformatics, 21(24):4401-4407, 2005.
- Lambrix P, Habbouche M, Perez M, `Evaluation of ontology development tools for bioinformatics', Bioinformatics, 19(12):1564-1571, 2003. (Also best paper selection for and re-publication in the 2005 edition of the IMIA Yearbook, pp 547-554.)
- Lambrix P, Tan H, `Merging DAML+OIL Ontologies', in Barzdins J, Caplinskas A, (eds), Databases and Information Systems (Selected Papers from the Sixth International Baltic Conference DB&IS'2004), pp 249-258, IOS Press, 2005. ISBN: 1 58603 485 5.
- Aberg, C., Lambrix, P., Shahmehri, N., `An Agent-based Framework for Integrating Workflows and Web Services', Proceedings of the IEEE WETICE Workshop on Agent-based Computing for Enterprise Collaboration, pp 27-32, Linköping, Sweden, 2005. Best paper award.
- Aberg, C., Lambrix, P., Takkinen, J., Shahmehri, N., `sButler: A Mediator between Organizations' Workflows and the Semantic Web', Proceedings of the WWW 2005 Workshop on Web Service Semantics: Towards Dynamic Business Integration, Chiba, Japan, 2005.
- Jakoniene V, Lambrix P, `Ontology-based Integration for Bioinformatics', Proceedings of the VLDB Workshop on Ontologies-based techniques for DataBases and Information Systems - ODBIS 2005, pp 55-58, Trondheim, Norway, 2005.
- Lambrix P, `Towards a Semantic Web for Bioinformatics using Ontology-based Annotation', Proceedings of the 14th IEEE International Workshops on Enabling Technologies: Infrastructures for Collaborative Enterprises, pp 3-7, Linköping, Sweden, 2005. Invited talk.
- Lambrix P, Tan H, `A Framework for Aligning Ontologies', Proceedings of the Third Workshop on Principles and Practice of Semantic Web Reasoning, LNCS 3703, pp 17-31, Dagstuhl, Germany, 2005. © Springer-Verlag.
- Strömbäck, L. (2005) Possibilities and Challenges Using XML Technology for Storage and Integration of Molecular Interactions, 16th International Workshop on Database and Expert Systems Applications (DEXA'05), pp 575-579, Copenhagen, Denmark, August 2005.
- Strömbäck L, Lambrix P, `Modeling for simulation and data storage of cellular pathways: Similarities and differences', Proceedings of the Fourth Modeling and Simulation in Biology, Medicine and Biomedical Engineering Conference - BioMedSim, pp 65-72, Linköping, Sweden, 2005.
2004
- Lambrix P, `Ontologies in Bioinformatics and Systems Biology', chapter 8 in Dubitzky W, Azuaje F, (eds), Artificial Intelligence Methods and Tools for Systems Biology, pp 129-146, Springer, 2004. ISBN-10: 1-4020-2859-8, ISBN-13: 978-1-4020-2859-5 (hard cover) / 1-4020-2959-4 (soft cover). publisher's book page.
- Lambrix P, Tan H, `Merging DAML+OIL Ontologies', Proceedings of the Sixth International Baltic Conference on Databases and Information Systems, pp 425-435, Riga, Latvia, 2004.
- Strömbäck, L. (2004) XML representations of pathway data: a comparison. In Proceedings of the ACM SIGIR'04 Workshop on Search and Discovery in Bioinformatics . Sheffield, UK.
2003
- Lambrix P, Edberg A, `Evaluation of ontology merging tools in bioinformatics', Pacific Symposium on Biocomputing - PSB03, 8:589-600, Kauai, Hawaii, USA, 2003.
- Lambrix P, Edberg A, Manis C, Tan H, `Merging DAML+OIL bio-ontologies', Proceedings of the International Workshop on Description Logics, Rome, Italy, 2003.
- Lambrix P, Jakoniene V, `Towards transparent access to multiple biological databanks', Proceedings of the First Asia-Pacific Bioinformatics Conference, pp 53-60, Adelaide, Australia, 2003.
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Last updated: 2024-10-03