Tentative
schedule (still subject to change)
- Oct 22, 1-3: Introduction + Structure
and function of the cell (Belöningen)
- Lecturer:
Gunilla Westermark,
IBK
- Literature:
One of the following:
Henrik Brändén. Molekylär biologi.
Studentlitteratur. William D Stansfield et al. Outline of molecular biology.
McGraw-Hill Professional Publishing 1996 . - Oct
26, 1-3: Genome organization and DNA replication (Belöningen)
- Lecturer:
Lena Eklund, IBK
- Literature:
One of the following:
Henrik Brändén. Molekylär biologi.
Studentlitteratur. William D Stansfield et al. Outline of molecular biology.
McGraw-Hill Professional Publishing 1996 - Oct
29, 10-12: Regulation of gene expression (Estraden)
- Lecturer:
Malin Bergman Jungeström, IBK
- Literature:
One of the following:
Henrik Brändén. Molekylär biologi.
Studentlitteratur. William D Stansfield et al. Outline of molecular biology.
McGraw-Hill Professional Publishing 1996 - Nov
2, 10-12: The basic toolbox of gene technology (Belöningen)
- Lecturer:
Lena Eklund, IBK
- Literature:
One of the following:
Henrik Brändén. Molekylär biologi.
Studentlitteratur. William D Stansfield et al. Outline of molecular biology.
McGraw-Hill Professional Publishing 1996 - Nov
5, 1-3: The Human Genome Project - the story of Bioinformatics (Estraden)
- Lecturer:
Lena Eklund, IBK
- Literature:
One of the following:
Henrik Brändén. Molekylär biologi.
Studentlitteratur. William D Stansfield et al. Outline of molecular biology.
McGraw-Hill Professional Publishing 1996 - Nov
9, 1-3: Cellular metabolism and regulation (Estraden)
- Lecturer:
Peter Strålfors,
IBK
- Literature:
One of the following:
Henrik Brändén. Molekylär biologi.
Studentlitteratur. William D Stansfield et al. Outline of molecular biology.
McGraw-Hill Professional Publishing 1996 - Nov
12, 1-3: Models of Physiology (Belöningen)
- Lecturer:
Per Ask, IMT and Sivert
Lindström, IBK
- Literature:
To be announced
Additional reading:
To be announce - Nov 16, 1-3:
Probabilistic Modeling for Sequence Analysis (Belöningen)
- Lecturer:
Timo Koski, MAI
- Literature:
http://www.wadsworth.org/resnres/bioinfo/tut1/index.htm
Additional
reading: P. Baldi
& S. Brunak: Bioinformtics: a machine learning approach - Nov
19, 1-3: Genome Comparison (Belöningen)
- Lecturer:
Svante Linusson, MAI
- Literature:
Chapter 10 in Pevzner, Pavel, "Computational Molecular Biology, An algorithmic
Approach", MIT Press.
Additional
reading: All of Pevzner, Pavel, "Computational Molecular Biology, An
algorithmic Approach", MIT Press, and Sankoff and Nadeau (Editors), "Comparative
Genomics", Kluwer Academic Publishers. - Nov
23, 1-3: Protein structure prediction (Belöningen)
- Lecturer:
Ulf Nilsson, IDA
- Literature:
R. Backofen. The
Protein Structure Prediction Problem: A Constraint Optimization Approach using
a New Lower Bound. J. Constraints (to appear).
Additional
reading: K. Dill et al. Principles of Protein Folding - A Perspective From
Simple Exact Models. Protein Science, 4:561-602, 1995. - Nov
26, 1-3: Biological databases (Belöningen)
- Lecturer:
Patrick Lambrix,
IDA
- Literature: Davidson,
S., Crabtree, J., Brunk, B., Schug, J., Tannen, V., Overton, C., and Stoeckert,
C., K2/Kleisli and GUS: Experiments in integrated access to genomic data sources,
IBM Systems Journal, Issue on Deep computing for the life sciences, 40(2):512-531,
2001.
Davidson, S., Overton, C., and Buneman, P., Challenges in Integrating
Biological Data Sources, Journal of Computational Biology, 2:557-572, 1995. Goble,
C., Stevens, R., Ng, G., Bechhofer, S., Paton, N., Baker, P., Peim, M., and Brass,
A., Transparent access to multiple bioinformatics information sources, IBM Systems
Journal, Issue on Deep computing for the life sciences, 40(2):532-551, 2001. - Nov
29, 1-3: Data mining (Estraden) NOTE: CHANGE OF DAY
- Lecturer:
Ankica Babic, IMT
- Literature:
Data Mining for Research and Systems in Bioinformatics,
Compendium from IMT, (to be distributed)
- Dec
18: Classification and clustering (CANCELLED!)
- Lecturer:
Jan Komorowski, NTNU
- Literature:
To be announced
Additional reading:
To be announced |