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Publications about Semantic Web research at LiU

2017



2016

  • Achichi M, Cheatham M, Dragisic Z, Euzenat J, Faria D, Ferrara A, Flouris G, Fundulaki I, Harrow I, Ivanova V, Jimenez-Ruiz E, Kuss E, Lambrix P, Leopold H, Li H, Meilicke C, Montanelli S, Pesquita C, Saveta T, Shvaiko P, Splendiani A, Stuckenschmidt H, Todorov K, Trojahn C, Zamazal O, Results of the Ontology Alignment Evaluation Initiative 2016, International Workshop on Ontology Matching - OM 2016, CEUR Workshop Proceedings Volume 1766, 73-129, Kobe, Japan, 2016.
  • Hartig O. and Pérez J.: LDQL: A Query Language for the Web of Linked Data Journal of Web Semantics 41, pages 9-29, 2016. pre-print
  • Freire SM, Teodoro D, Wei-Kleiner F, Sundvall E, Karlsson D, Lambrix P, Comparing the Performance of NoSQL Approaches for Managing Archetype-Based Electronic Health Record Data, PLoS ONE 11(3): e0150069, 2016.
  • Hartig O. and Pirro G.: SPARQL with Property Paths on the Web. Semantic Web Journal, 2016. pre-print.
  • Dragisic Z, Ivanova V, Lambrix P, Faria D, Jimenez-Ruiz E, Pesquita C, User validation in ontology alignment, 15th International Semantic Web Conference, LNCS 9981, 200-217, Kobe, Japan, 2016. pre-print.
  • Lambrix P, Dragisic Z, Ivanova V, Anslow C, Visualization for Ontology Evolution, 2nd International Workshop on Visualization and Interaction for Ontologies and Linked Data, CEUR Workshop Proceedings Volume 1545, 54-67, Kobe, Japan, 2016. slides.
  • Hartig O. and Buil-Aranda C.: Reducing the Network Load of Triple Pattern Fragments by Supporting Bind Joins. In Poster and Demo Proceedings of the 15th International Semantic Web Conference (ISWC), Kobe, Japan, 2016. pre-print.
  • Olaf Hartig and Carlos Buil-Aranda: Bindings-Restricted Triple Pattern Fragments. Proceedings of the 15th International Conference on Ontologies, Databases, and Applications of Semantics (ODBASE), Rhodes, Greece, 2016. extended pre-print.
  • Hartig O. and Özsu M. T.: Walking without a Map: Ranking-Based Traversal for Querying Linked Data. In Proceedings of the 15th International Semantic Web Conference (ISWC), Kobe, Japan, 2016. pre-print.
  • Ivanova V, Applications of Large Displays: Advancing User Support in Large Scale Ontology Alignment, 15th International Semantic Web Conference - Doctoral Consortium, Kobe, Japan, 2016.
  • Magnus Knuth, Olaf Hartig, and Harald Sack: Scheduling Refresh Queries for Keeping Results from a SPARQL Endpoint Up-to-Date. Proceedings of the 15th International Conference on Ontologies, Databases, and Applications of Semantics (ODBASE), Rhodes, Greece, 2016. pre- print.


2015



2014



2013



2012



2011

  • Gangemi A., Presutti V., and Blomqvist E.: The Computational Ontology Perspective: Design Patterns for Web Ontologies. In: Approaches to Legal Ontologies, Law, Governance and Technology Series, Volume 1 (Chapter 12), Springer, 2011.
  • Strömbäck L, Freire J, (2011) 'XML Management for Bioinformatics Applications'. Computing in Science and Engineering 13(5):12-22, 2011.
  • Strömbäck L, Ivanova V, Hall D, Using Statistical Information for Efficient Design and Evaluation of Hybrid XML Storage, International Journal On Advances in Software 4(3-4):389-400, 2011.
  • Ivanova V, Strömbäck L, Creating infrastructure for tool-independent querying and exploitation of scientific workflows, 7th IEEE International Conference on e-Science, Stockholm, Sweden, 2011.
  • Lambrix P, A framework for session-based ontology alignment, Sixth International Workshop on Ontology Matching - OM 2011 , Bonn, Germany, 2011.
  • Lambrix P, Liu Q, Debugging is-a structure in networked taxonomies, Proceedings of the Fourth International Workshop on Semantic Web Applications and Tools for Life Sciences - SWAT4LS11, 58-65, London, UK, 2011.
  • Lambrix P, Liu Q, RepOSE: A System for Debugging is-a Structure in Networked Taxonomies, Demo at the 10th International Semantic Web Conference - ISWC 2011, Bonn, Germany, 2011.
  • Strömbäck L, Ivanova V, Hall D (2011) 'Exploring Statistical Information for Applications-Specific Design and Evaluation of Hybrid XML storage'. Databases, Knowledge, and Data Applications DBKDA 2011, published by IEEE, January 2011, St Maarten, The Netherlands.
  • He Tan, Rajaram Kaliyaperumal, Nirupama Benis, Building frame-based corpus on the basis of ontological domain knowledge, Proceedings of the Workshop on BioNLP, 74-82, Portland, Oregon, USA, 2011.
  • Tan H, Kaliyaperumal R, Benis N, 'Ontology-driven Construction of Corpus with Frame Semantics Annotations'. poster at The Fourth International Symposium on Languages in Biology and Medicine (LBM 2011). Singapore, 2011.


2010

  • Blomqvist E.: Ontology Patterns - Typology and Experiences from Design Pattern Development. In: Proceedings of SAIS 2010, Uppsala, May 20-21, 2010.
  • Blomqvist E., Ceruti M., Waters J., and McGarry D.: A Decision-making Format for the Semantic Web. In: Proceedings of the 2nd International Workshop on Ontology Patterns - WOP2010, ISWC2010 Workshops Volume VIII, CEUR workshop proceedings, Vol-671, 2010.
  • Blomqvist E., Presutti V., Daga E., and Gangemi A.: Experimenting with eXtreme Design. In: Proceedings of EKAW 2010 - Knowledge Engineering and Knowledge Management by the Masses, Lisbon, October 11-15, Lecture Notes in Computer Science, Springer, 2010.
  • Khan M. T. and Blomqvist E.: Ontology Design Pattern Detection - Initial Method and Usage Scenarios. In: Proceedings of the Fourth International Conference on Advances in Semantic Processing (SEMAPRO 2010). XPS, ThinkMind Digital Library, 2010.
  • Åsberg M, Strömbäck L (2010) 'Bioinformatics: From Disparate Web Services to Semantics and Interoperability.' International Journal of Advances in Software, 3(3-4):396-406. Invited contribution.
  • David Hall, Lena Strömbäck: Generation of Synthetic XML for Evaluation of Hybrid XML Systems. DASFAA Workshops 2010: 191-202
  • Liu Q, Lambrix P, A system for debugging missing is-a structure in networked ontologies, Proceedings of the Seventh International Conference on Data Integration in the Life Sciences - DILS 2010, LNBI 6254, 50-57, Gothenburg, Sweden, 2010. © Springer-Verlag.
  • Liu Q, Lambrix P, Debugging the missing is-a structure of networked ontologies, Proceedings of the 7th Extended Semantic Web Conference - ESWC10, Part II, LNCS 6089, 478-482, Heraklion, Greece, 2010.
  • Tan H, A study on the relation between linguistics-oriented and domain-specific semantics, Proceedings of the 3rd International Workshop on Semantic Web Applications and Tools for the Life Sciences, Berlin,Germany, December 8-10, 2010.
  • Mikael Asberg, Lena Strömbäck: Interoperable and Easy-to-Use Web Services for the Bioinformatics Community - A Case Study. DBKDA 2010: 16-21


2009

  • Blomqvist E.: OntoCase-Automatic Ontology Enrichment Based on Ontology Design Patterns. In: The Semantic Web - ISWC 2009, 8th International Semantic Web Conference, ISWC 2009, Chantilly, VA, USA, October 25-29, 2009. Proceedings. pp. 65-80, Lecture Notes in Computer Science, Springer, 2009.
  • Presutti V., Daga E., Gangemi A., and Blomqvist E.: eXtreme Design with Content Ontology Design Patterns. In: Proceedings of the Workshop on Ontology Patterns (WOP 2009), collocated with the 8th International Semantic Web Conference (ISWC-2009), Washington D.C., USA, 25 October, 2009. CEUR workshop proceedings, Vol-516, 2009.
  • Blomqvist E., Gangemi A. and Presutti V.: Experiments on pattern-based ontology design. In: Proceedings of the 5th International Conference on Knowledge Capture (K-CAP 2009), September 1-4, 2009, Redondo Beach, California, USA. pp. 41-48, ACM, 2009.
  • Lambrix P, Strömbäck L, Tan H, Information integration in bioinformatics with ontologies and standards, chapter 8 in Bry, Maluszynski, (eds), Semantic Techniques for the Web: The REWERSE perspective, LNCS 5500, 343-376, Springer, 2009. ISBN: 978-3-642-04580-6. publisher's book page.
  • Baker C, Lambrix P, Laurila Bergman J, Kanagasabai R, Ang WT, Slicing through the scientific literature, Proceedings of the 6th International Workshop on Data Integration in the Life Sciences - DILS09, LNBI 5647, 127-140, Manchester, UK, 2009. slides.
  • Ellkvist, T, Koop, D, Freire, J, Silva, C T, and Strömbäck, L (2009) Using Mediation to Achieve Provenance Interoperability, In IEEE International Workshop on Scientific Workflows, 2009.
  • Ellkvist, T, Lena Strömbäck, L, Didier Lins, L, and Freire J (2009) A First Study on Strategies for Generating Workflow Snippets. The first International Workshop on Keyword Search on structured data KEYS 2009, Collocated with ACM SIGMOD/PODS, June 28th, 2009, Providence, Rhode Island, USA
  • Lambrix P, Liu Q, Using partial reference alignments to align ontologies, Proceedings of the 6th European Semantic Web Conference - ESWC09, LNCS 5554, 188-202, Heraklion, Greece, 2009. slides, video.
  • Lambrix P, Liu Q, Tan H, Repairing the missing is-a structure of ontologies, Proceedings of the 4th Asian Semantic Web Conference - ASWC09, LNCS 5926, 76-90, Shanghai, China, 2009.
  • Lambrix P, Liu Q, Tan H, RepOSE: an environment for repairing missing ontological structure, Proceedings of the 4th Asian Semantic Web Conference - ASWC09, LNCS 5926, 365-366, Shanghai, China, 2009.
  • Lambrix P, Liu Q, Tan H, A system for repairing missing is-a structure in ontologies, Semantic Web Applications and Tools for Life Sciences - SWAT4LS09, Amsterdam, Netherlands, 2009.
  • Lambrix P, Liu Q, Tan H, Aligning Anatomy Ontologies in the Ontology Alignment Evaluation Initiative, 25th Workshop of the Swedish Artificial Intelligence Society, 13-20, Linköping, Sweden, 2009.
  • Strömbäck, L, Schmidt S (2009) An Extension of XQuery for Graph Analysis of Biological, Proc. The First International Conference on Advances in Databases, Knowledge, and Data Applications, DBKDA 2009, March 1-6, 2009, Cancun, Mexico Best paper award
  • Strömbäck, L, Åsberg, M, Hall, D (2009) HShreX: a Tool for Design and Evaluation of Hybrid XML Storage, FLexDBIST 2009, Linz Austria.
  • Tan H, Lambrix P, Selecting an Ontology for Biomedical Text Mining, Proceedings of the Workshop on BioNLP, 55-62, Boulder, Colorado, USA, 2009.


2008

  • Blomqvist, E.: Case-based Reasoning for Ontology Engineering. In: Proceedings of The 10th Scandinavian Conference on Artificial Intelligence (SCAI 2008), Stockholm, May 26-28, IOS Press, 2008.
  • Blomqvist E.: Pattern Ranking for Semi-automatic Ontology Construction. In: Proceedings of SAC'08: Track on Semantic Web and Applications (SWA), Fortaleza, Ceara, Brazil, March 16-20, ACM, 2008.
  • Blomqvist, E. and Öhgren, A.: Constructing an enterprise ontology for an automotive supplier. In: Engineering applications of artificial intelligence, Volume 21, Issue 3, pp.386-397, Elsevier, 2008.
  • Blomqvist, E., Öhgren, A. and Sandkuhl, K.: Comparing and Evaluating Ontology Construction in an Enterprise Context. In: Lecture Notes in Business Information Processing - Enterprise Information, Volume 3, pp.221-240, Springer, 2008.
  • Ricklefs, M. and Blomqvist, E.: Ontology-based relevance assessment - An evaluation of different semantic similarity measures. In: Proc. of OTM 2008: ODBASE - The 7th International Conference on Ontologies, DataBases, and Applications of Semantics, Monterrey, Mexico, Nov.10-14, Springer, 2008.
  • Lambrix P, Tan H, `Ontology alignment and merging', chapter 6 in Burger, Davidson, Baldock, (eds), Anatomy Ontologies for Bioinformatics: Principles and Practice, pp 133-150, Springer, 2008. ISBN: 978-1-84628-884-5. publisher's book page.
  • Ellqvist T, Freire J, Koop D, Silva C, Strömbäck L (2008) Using Mediation to Achieve Provenance Interoperability Proc. 4th IEEE International Conference on e-Science

  • Tommy Ellkvist, David Koop, Erik W. Anderson, Juliana Freire, and Claudio Silva, Using Provenance to Support Real-Time Collaborative Design of Workflow, Proceedings of the International Provenance and Annotation Workshop (IPAW), June 17-18, 2008, Salt Lake City.
  • Köhn D, Strömbäck L (2008) 'A method for Semi-automatic Standard Integration in Systems Biology', Proc. 19th Intern. Conf. on Database and Expert Systems Applications, pp 745 - 752, Turin, Italy, paper, DOI 10.1007/978-3-540-85654-2_66
  • Lambrix P, Tan H, Liu Q, 'SAMBO and SAMBOdtf results for the Ontology Alignment Evaluation Initiative 2008', Proceedings of the Third International Workshop on Ontology Matching, 190-198, Karlsruhe, Germany, 2008.
  • Lambrix P, Tan H, Xu W, 'Literature-based alignment of ontologies'. Proceedings of the Third International Workshop on Ontology Matching, 219-223, Karlsruhe, Germany, 2008. extended version.
  • Strömbäck, L Eifrem E, Faraglia P (2008) 'Custmizable XML Management on a Navigational Database Framework', Proc. 19th International Workshop on Database and Expert Systems Applications, Turin, Italy pp 261 - 265, paper, DOI 10.1109/DEXA.2008.48

  • Tan H, 'Knowledge-based Gene Symbol Disambiguation'. Second International Workshop on Data and Text Mining in Bioinformatics, 73-76, Napa Valley, California, USA, 2008.


2007

  • Albertsen, T. and Blomqvist, E.: Describing Ontology Applications. In: Proceedings of the 4th European Semantic Web Conference (ESWC07), Innsbruck, Austria, June 3-7, Springer, 2007.
  • Billig, A., Blomqvist, E. and Lin, F.: Semantic Matching based on Enterprise Ontologies. In: Proceedings of OTM 2007: ODBASE - The 6th International Conference on Ontologies, DataBases, and Applications of Semantics, Vilamoura, Algarve, Portugal, November 25-30, Springer, 2007.
  • Blomqvist, E.: OntoCase - A Pattern-based Ontology Construction Approach. In: Proc. of OTM 2007: ODBASE - The 6th International Conference on Ontologies, DataBases, and Applications of Semantics, Vilamoura, Algarve, Portugal, November 25-30, Springer, 2007.
  • Blomqvist, E.: Semi-automatic Ontology Engineering using Patterns. In: Proc. of ISWC07 Doctoral Consortium, Busan, Korea, Nov. 11-15, Springer, 2007.
  • Blomqvist, E.: Pattern-based Ontology Construction. In: Proc. of the Knowledge Web PhD Symposium 2007, Innsbruck, Austria, June 2007.
  • Jakoniene V, Lambrix P, `A Tool for Evaluating Strategies for Grouping of Biological Data', Journal of Integrative Bioinformatics, special issue on the 4th Integrative Bioinformatics Workshop, 4(3):83, 2007. journal page.
  • Lambrix P, Tan H, `A Tool for Evaluating Ontology Alignment Strategies', Journal on Data Semantics, LNCS 4380, VIII:182-202, 2007. © Springer-Verlag. pre-print, journal page.
  • Strömbäck L, Hall D, Lambrix P, `A review of standards for data exchange within systems biology', Proteomics, 7(6):857-867, 2007. Invited contribution. journal page.
  • Lambrix P, Tan H, Jakoniene V, Strömbäck L, `Biological Ontologies', chapter 4 in Baker, Cheung, (eds), Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences, pp 85-99, Springer, 2007. ISBN-10: 0-387-48436-1, ISBN-13: 978-0-387-48436-5. publisher's book page.
  • Tan H, Lambrix P, `A method for recommending ontology alignment strategies', Proceedings of the 6th International Semantic Web Conference, LNCS 4825, pp 494-507 Busan, Korea, 2007.
  • Tan H, Lambrix P, 'SAMBO results for the Ontology Alignment Evaluation Initiative 2007', Proceedings of the Second International Workshop on Ontology Matching, pp 236-243, Busan, Korea, 2007.


2006

  • Blomqvist, E. and Öhgren, A.: Constructing an Enterprise Ontology for an Automotive Supplier. In: Proceedings of 12th IFAC Symposium on Information Control Problems in Manufacturing, Saint-Etienne, France, May 2006.
  • Blomqvist, E., Öhgren, A. and Sandkuhl, K.: Ontology Construction in an Enterprise context: Comparing and Evaluating two Approaches. In: Proceedings of 8th International Conference on Enterprise Information Systems, Paphos, Cyprus, May 2006.
  • Lambrix P, Tan H, `SAMBO - A System for Aligning and Merging Biomedical Ontologies', Journal of Web Semantics, Special issue on Semantic Web for the Life Sciences, 4(3):196-206, 2006. pre-print, journal page.
  • Strömbäck L, Jakoniene V, Tan H, Lambrix P, `Representing, storing and accessing molecular interaction data: a review of models and tools', Briefings in Bioinformatics, 7(4):331-338, 2006. Invited contribution. journal page.
  • Sauro H M, Uhrmacher A M, Harel D, Hucka M, Kwiatkowska M, Mendes P, Shaffer C A, Strömbäck L, Tyson J J. (2006) Challenges for Modeling and Simulation Methods in Systems Biology. In: Track on Modeling and Simulation in Computational Biology at the Winter Simulation Conference 2006 , paper, DOI 10.1109/WSC.2006.322948
  • Strömbäck, L. (2006) A classification for comparing standardized XML data. Proc. 17th International Workshop on Database and Expert Systems Applications (DEXA'06), pp 517-521, Krakow, Poland, September 2006, paper, DOI 10.1109/DEXA.2006.5
  • Strömbäck, L. (2006) A method for alignment of standardised XML information within systems biology. Winter Simulation 2006 In: Track on Modeling and Simulation in Computational Biology at the Winter Simulation Conference 2006 , paper, DOI 10.1109/WSC.2006.322933
  • Strömbäck, L, Hall, D. (2006) An evaluation of the Use of XML for Representation, Querying, and Analysis of Molecular Interactions. In T. Grust et. al. (Editors) Current Trends in Database Technology - EDBT 2006 Workshops. LNSC 4254, Springer verlag, paper, DOI 10.1007/11896548_20
  • Aberg C, Aberg J, Lambrix P, Shahmehri N, `A Platform to Evaluate the Technology for Service Discovery in the Semantic Web', Proceedings of the Twenty-First National Conference on Artificial Intelligence - AAAI-2006, pp 1253-1258, Boston, MA, USA, 2006. © AAAI.
  • Chen B, Tan H, Lambrix P, `Structure-based filtering for ontology alignment', Proceedings of the IEEE WETICE Workshop on Semantic Technologies in Collaborative Applications, pp 364-369, 2006.
  • Doms A, Jakoniene V, Lambrix P, Schroeder M, Wächter T, `Ontologies and Text Mining as a Basis for a Semantic Web for the Life Sciences', Reasoning Web, Second International Summer School, LNCS 4126, pp 164-183, 2006. © Springer-Verlag.
  • Jakoniene V, Rundqvist D, Lambrix P, `A method for similarity-based grouping of biological data', Proceedings of the 3rd International Workshop on Data Integration in the Life Sciences - DILS06, LNBI 4075, pp 136-151, Hinxton, UK, 2006. © Springer-Verlag.
  • Tan H, Jakoniene V, Lambrix P, Aberg J, Shahmehri N, `Alignment of Biomedical Ontologies using Life Science Literature', Proceedings of the International Workshop on Knowledge Discovery in Life Science Literature, LNBI 3886, pp 1-17, Singapore, 2006. © Springer-Verlag.
  • Wächter T, Tan H, Wobst A, Lambrix P, Schroeder M, `A Corpus-driven Approach for Design, Evolution and Alignment of Ontologies', Proceedings of the Winter Simulation Conference, pp 1595-1602, 2006. Invited contribution.


2005

  • Blomqvist, E.: Fully Automatic Construction of Enterprise Ontologies Using Design Patterns: Initial Method and First Experiences. In: Proc. of OTM 2005: ODBASE the 4th International Conference on Ontologies, Data Bases, and Applications of Semantics, Agia Napa, Cyprus, Oct 31- Nov 4, Springer, 2005.
  • Blomqvist, E., Levashova, T., Öhgren, A., Sandkuhl, K. and Smirnov, A.: Formation of Enterprise Networks for Collaborative Engineering. In: Post-conference proceedings of 3. International Workshop on Collaborative Engineering, Sopron, Hungary, April 2005.
  • Blomqvist, E., Levashova, T., Öhgren, A., Sandkuhl, K., Smirnov, A. and Tarassov, V.: Configuration of Dynamic SME Supply Chains Based on Ontologies. In: Proc. of the 2nd Intl Conference on Industrial Applications of Holonic and Multi-Agent Systems. Copenhagen, Denmark, Aug.2005.
  • Blomqvist, E. and Sandkuhl, K.: Patterns in Ontology Engineering - Classification of Ontology Patterns. In: Proc. of the 7th International Conference on Enterprise Information Systems, Miami, USA, May 2005.
  • Thörn, C., Eriksson, Ö., Blomqvist, E. and Sandkuhl, K.: Potentials and Limits of Graph-Algorithms for Discovering Ontology Patterns. In: Proc. of the International Conference on Intelligent Agents, Web Technology and Internet Commerce - IAWTIC'2005, Wien, Austria, Nov. 2005.
  • Strömbäck L, Lambrix P, `Representations of molecular pathways: An evaluation of SBML, PSI MI and BioPAX', Bioinformatics, 21(24):4401-4407, 2005. journal page.
  • Lambrix P, Habbouche M, Perez M, `Evaluation of ontology development tools for bioinformatics', Bioinformatics, 19(12):1564-1571, 2003. journal page. (Also best paper selection for and re-publication in the 2005 edition of the IMIA Yearbook, pp 547-554.)
  • Lambrix P, Tan H, `Merging DAML+OIL Ontologies', in Barzdins J, Caplinskas A, (eds), Databases and Information Systems (Selected Papers from the Sixth International Baltic Conference DB&IS'2004), pp 249-258, IOS Press, 2005. ISBN: 1 58603 485 5.
  • Aberg, C., Lambrix, P., Shahmehri, N., `An Agent-based Framework for Integrating Workflows and Web Services', Proceedings of the IEEE WETICE Workshop on Agent-based Computing for Enterprise Collaboration, pp 27-32, Linköping, Sweden, 2005. Best paper award.
  • Aberg, C., Lambrix, P., Takkinen, J., Shahmehri, N., `sButler: A Mediator between Organizations' Workflows and the Semantic Web', Proceedings of the WWW 2005 Workshop on Web Service Semantics: Towards Dynamic Business Integration, Chiba, Japan, 2005.
  • Jakoniene V, Lambrix P, `Ontology-based Integration for Bioinformatics', Proceedings of the VLDB Workshop on Ontologies-based techniques for DataBases and Information Systems - ODBIS 2005, pp 55-58, Trondheim, Norway, 2005.
  • Lambrix P, `Towards a Semantic Web for Bioinformatics using Ontology-based Annotation', Proceedings of the 14th IEEE International Workshops on Enabling Technologies: Infrastructures for Collaborative Enterprises, pp 3-7, Linköping, Sweden, 2005. Invited talk.
  • Lambrix P, Tan H, `A Framework for Aligning Ontologies', Proceedings of the Third Workshop on Principles and Practice of Semantic Web Reasoning, LNCS 3703, pp 17-31, Dagstuhl, Germany, 2005. © Springer-Verlag.
  • Strömbäck, L. (2005) Possibilities and Challenges Using XML Technology for Storage and Integration of Molecular Interactions16th International Workshop on Database and Expert Systems Applications (DEXA'05), pp 575-579, Copenhagen, Denmark, August 2005.
  • Strömbäck L, Lambrix P, `Modeling for simulation and data storage of cellular pathways: Similarities and differences', Proceedings of the Fourth Modeling and Simulation in Biology, Medicine and Biomedical Engineering Conference - BioMedSim, pp 65-72, Linköping, Sweden, 2005.


2004

  • Lambrix P, `Ontologies in Bioinformatics and Systems Biology', chapter 8 in Dubitzky W, Azuaje F, (eds), Artificial Intelligence Methods and Tools for Systems Biology, pp 129-146, Springer, 2004. ISBN-10: 1-4020-2859-8, ISBN-13: 978-1-4020-2859-5 (hard cover) / 1-4020-2959-4 (soft cover). publisher's book page.
  • Lambrix P, Tan H, `Merging DAML+OIL Ontologies', Proceedings of the Sixth International Baltic Conference on Databases and Information Systems, pp 425-435, Riga, Latvia, 2004. (same as book chapter)
  • Strömbäck, L. (2004) XML representations of pathway data: a comparison. In Proceedings of the ACM SIGIR'04 Workshop on Search and Discovery in Bioinformatics . Sheffield, UK.


2003



Page responsible: Olaf Hartig
Last updated: 2017-05-05